BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359508

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40070.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   804    0.0  


> AT2G40070.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: proline-rich family protein (TAIR:AT3G09000.1); Has 
35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr2:16728194-16731606 REVERSE LENGTH=2454
Length=2454

 Score =  804 bits (435),  Expect = 0.0
 Identities = 483/506 (95%), Gaps = 3/506 (1%)
 Strand=Plus/Minus

Query  1     ATGGTTTTAGATGGAGGAAGTGTGGGTCTTGAAGTTGGTGTTGAAGATCTGGCAGTAGAT  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1375  ATGGTTTTAGATGGAGGAAGTGTGGGTCTTGAAGTTGGTGTTGAAGATCTGGCAGTAGAT  1316

Query  61    CTTGACAGAGGTGTTGTGGACCTTGAAGGACCTGCAGATTTTGTGGCGGTGCTGGGGGTA  120
             |||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  1315  CTTGACAGAGGTGTGGTGGACCTTGAAGGACCTGCAGATTTTGTGGTGGTGCTAGGGGTA  1256

Query  121   GATCTAGTTGCTGAACTAGCAGATCTAGCAGTTGAAATAGTCGGCTTAGATGCAGTCGGT  180
             ||||||||| |||||| ||||||||||||||||||  ||||||||||||||||||| |||
Sbjct  1255  GATCTAGTTACTGAACCAGCAGATCTAGCAGTTGAGGTAGTCGGCTTAGATGCAGTAGGT  1196

Query  181   GTGAGCCTAGATGAT-A-AA-CTAGTTGACCTACTCATAGGAGTGGGCTTAGTTGTTGCA  237
             ||||||||||||||| | || || ||||||||||||||||| ||||||||||| ||||||
Sbjct  1195  GTGAGCCTAGATGATGATAAACTTGTTGACCTACTCATAGGCGTGGGCTTAGTCGTTGCA  1136

Query  238   GATACTGTGGACCTAGAATTAGTCAAAGAAGGTCGAGTAGTTGAGGAGACAGTAGCTCGC  297
             |||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||
Sbjct  1135  GATACTGTGGACCTCGAGTTAGTCAAAGAAGGTCGAGTAGCTGAGGAGACAGTGGCTCGC  1076

Query  298   GAAGTGGGTGTTGAAGGCCTTGAGGATTTTGAATTTGTCGTCAGTGTTGATGATCTTCCA  357
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  1075  GAAGTGGGTGTTGAAGGCCTTGAGGATTTTGAATTTGCCGTCAGTGTTGATGATCTTCCA  1016

Query  358   GTGGGTGTGGCAGGTCTTGATCCAGGTCCTCCAGACGATGAAGGTCTTCGACTTGCTCCA  417
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1015  GTGGGTGTGGCAGGTCTTGATCCAGGTCCTCCAGATGATGAAGGTCTTCGACTTGCTCCA  956

Query  418   CTTGAAGAGCTCAATCCAGGAGAAGAAGTTTGTTGTCTAGATGTTAGATGGTTCCTTGCA  477
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  955   CTGGAAGAGCTCAATCCAGGAGAAGAAGTTTGTTGTCTAGATGTTAGATGGTTCCTTGCA  896

Query  478   GCAGGCTCTGTTGAGGAATTCGCCAG  503
             |||| ||||||||||||||| |||||
Sbjct  895   GCAGACTCTGTTGAGGAATTTGCCAG  870



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5