BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359510
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47300.2 | Symbols: | ribonuclease Ps | chr2:19418471-19422... 1655 0.0
> AT2G47300.2 | Symbols: | ribonuclease Ps | chr2:19418471-19422241
FORWARD LENGTH=2908
Length=2908
Score = 1655 bits (896), Expect = 0.0
Identities = 1077/1160 (93%), Gaps = 29/1160 (3%)
Strand=Plus/Plus
Query 1 ATGGCTACTACTTCGAATGGAAACTCTAAGAAAAGAGATGGTGGTTTATCGTCGCTTGCC 60
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 263 ATGGCTACTACTGCGAATGGAAACTCTAAGAAAAGAGATGGTGGTCTATCGTCGCTTGCC 322
Query 61 CCTCGCAAAATCAACGTCCAGAAATTCTCAGAGGCTCGAGCAGCGGAGCTCGAATCTCTT 120
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 323 CCTCGCAAAATCAACGTGCAGAAATTCTCAGAGGCTCGAGCACCAGAGCTCGAATCTCTT 382
Query 121 CACTCCATTGTGTCTGAACGTTTGAACAAGGACTTTCGATCAAAGAGGAATAAGAGGAGA 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CACTCCATTGTGTCTGAGCGTTTGAACAAGGACTTTCGATCAAAGAGGAATAAGAGGAGA 442
Query 181 AGGACCAATTCTTACAATAATCAACCTGCAAAGAAGCGTTATATACAGAGGCAGAAATCA 240
||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||||
Sbjct 443 AGGACCAATTCTTACAATAATCAACCTGCGAAGAAGCGTAATATAAAGAGGCAAAAATCA 502
Query 241 GAGTCATTGATTGGTCAAGTATCAGGAGGAGGAGACCATGAAACAAAGATCACTAGACGA 300
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 503 CAGTCATTGATTGGTCAAGTATC---AGGAGGAGACCATGAAGTAAAGATCACTAGACGA 559
Query 301 GTTAAGAGAAGAATGGAACTTAAAGGGAACCCTCAATCTGGTTTTTGTACTTCTGGTGAT 360
||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 560 GTTAAGAGAAGAATGGAACTTAAAGGGAACCCTGAAACTGGGTTTTGTACTTCTGGTGAT 619
Query 361 GGGACAAAGAGGCTGAGAACACATGTTTGGCATGCTAAACGATTTACGATGACTAAGCTT 420
|| || |||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 620 GGAACTAAGAGGCTGAGAACACATGTTTGGCACGCTAAACGATTCACTATGACTAAGCTT 679
Query 421 TGGGGCTTTCACCTTCCTCTTGGTTTACATGGAAGAGGAAGGGGATCTAGGGATGTCTTG 480
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 680 TGGGGTTTTCACCTTCCTCTTGGTTTACACGGAAGAGGAAGGGGATCTAGGGATGTCTTG 739
Query 481 AAGCAATCTAGGCAAGGTGTTCTTCTTCATGATGCAAGCTATCACA----T-TGC----- 530
||||| ||| |||||||||||||| ||||||||||||||||||||| | |||
Sbjct 740 AAGCAGTCTCGGCAAGGTGTTCTTGTTCATGATGCAAGCTATCACATTGCTGTGCAATTG 799
Query 531 -----T------GGCTCACTCTTGTCGATATTAAATATGCTACTAGAGCCTTCTCCTTCA 579
| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 800 GAGGGTCCAGAGGGCTCACTCTTATCGATATTAAATATGCTACTAGAGCCTTCTCCGTCA 859
Query 580 TCTCATTCCAAGGAAGTTTTTGACTCTATTCTCACAGGCCGTAGTTATGAAAACGCCATG 639
|||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||
Sbjct 860 TCTCATTCGAAGGAAGTTTTCGACTCTATTCTCACTGGCGGTAGTTATGAAAACGCCATG 919
Query 640 CTTTATCATCTCGAACCACCAGTTTCTCAGGCGATTGCTCCTGTAACTTATATGTGGAGA 699
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 920 CTTTATCATGTCGAACCACCAGTTTCTCAGGCGATTGCTCCTGTTACTTATATGTGGAGA 979
Query 700 CCTTCTCAGATACCAAAGAGAAGAGATGAGGAGAAAGGAGGG-GACGGCATAGGAACTGA 758
|||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||
Sbjct 980 CCTTCTAAGATACCAAAGAGAAGAAATGAGGAGAAAGG-GGGTGACGGCATAGGAACTGA 1038
Query 759 TCGCCCAGTCTCAGATAGAGATTATGTAGACTTTCGAAAACTTTGGGTGTGGATCCATGC 818
|| |||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 1039 TCTCCCAGTCTCAGATAAAGATCATGAAGACTTTCGTAAACTTTGGGTGTGGATCCATGC 1098
Query 819 TTCTTCCTTCACTGAAGGATATGCTATTCTTAAAGTAGCTTGTCAGAAACAGATGAATGA 878
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TTCTTCCTTCAGTGAAGGATATGCTATTCTTAAAGTAGCTTGTCAGAAACAGATGAATGA 1158
Query 879 GACAGGTGTCTCAGTTGATTGCTTTTCACTCGAGGGCCAGCTTGCAAAACTTGAGATTTT 938
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1159 GACAGGTGTCTCAGTTGATTGCTTTTCACTCGAGGGTCAGCTTGCAAAACTTGAGATTTT 1218
Query 939 TGGTCCAAAAGCATCTCATCTTCTCCAGAAGACCCTACATCCTGCTACAAGTAGCTCAGA 998
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 1219 TGGTTCAAAAGCATCTCATCTTCTCCAGAAGACCTTACATCCTGCTACAAGTACCTCTGA 1278
Query 999 GGATACCTCTATTTCTAA-AATGTGTTCAATGGAAAAAGCTGAGGTTAAAAACGTTGCTG 1057
| || |||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GAATCCCTCTATT-CTAAGAAAGTGTTCAATGGAAAAAGCTGAGGTTAAAAACGTTGCTG 1337
Query 1058 ATCCTTACAAAGAAGAGAACGTATCATCTGGCGCTATTTTAGCACAGTTTGTCATAGATC 1117
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 ATCTTTACACAGAAGAGAACGTATCATCTGGCGCTATTTTAGCACAGTTTGTCATAGATC 1397
Query 1118 GCGCGGTTAATCCTGAATAG 1137
||||||| ||||||| |||
Sbjct 1398 -CGCGGTTGATCCTGACTAG 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5