BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359531
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30240.1 | Symbols: ATCHX13, CHX13 | Cation/hydrogen exchang... 3011 0.0
> AT2G30240.1 | Symbols: ATCHX13, CHX13 | Cation/hydrogen exchanger
family protein | chr2:12899907-12902779 REVERSE LENGTH=2496
Length=2496
Score = 3011 bits (1630), Expect = 0.0
Identities = 1830/1928 (95%), Gaps = 7/1928 (0%)
Strand=Plus/Plus
Query 1 ATGACTTCATTTCCGGTTACAACCACGGTATTAGCTGAACTTAACATCCTTAACTCTGAG 60
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 571 ATGACTTCATTCCCGGTTACAACCACGGTCTTAGCGGAACTTAACATCCTTAACTCCGAG 630
Query 61 CTAGGTCGGTTAGCCACCCACTGCTCAATGGTCTGCGAAATTTGTAGCTGGTTCGTCGCT 120
|||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 631 CTAGGTCGTTTAGCCACCCACTGCTCAATGGTCTGCGAAGTTTGTAGCTGGTTTGTCGCT 690
Query 121 CTCGCGTTTAATCTCTACACGCGTGAGCGGACGATGACTAGCCTTTACGCGATTTTCATG 180
||||| |||||||||||||| ||||| |||||||||||||| ||||||||| ||| ||||
Sbjct 691 CTCGCTTTTAATCTCTACACACGTGACCGGACGATGACTAGTCTTTACGCGCTTTCCATG 750
Query 181 ATCGTAGGTCTTCTTCTGGTGATATATTTCGTCTTTAGACCTATAATAGTATGGCTCACC 240
||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 751 ATCATAGGTCTCCTTCTGGTGATTTATTTCGTCTTTAGACCTATAATAGTATGGCTCACC 810
Query 241 CAGAGGAAAAGCAAATCAATGGATAAGAAAGACGTTGTACCGTTCTTCCCGGTCCTCTTT 300
|||||||||| |||||| |||||||||||||||||||| |||||||| ||||| |||||
Sbjct 811 CAGAGGAAAACCAAATCCATGGATAAGAAAGACGTTGTCCCGTTCTTTCCGGTACTCTTG 870
Query 301 CTTTTATCTGTAGCTAGCCTTAGCGGAGAGGCCATGGGGGTCCATGCTGCGTTTGGAGCG 360
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 871 CTTTTATCTATAGCTAGCCTTAGTGGAGAGGCCATGGGGGTCCATGCTGCGTTTGGAGCG 930
Query 361 TTTTGGTTAGGCGTTTCTCTCCCTGATGGTCCGCCTTTAGGCACGGAACTTGCTGCGAAA 420
||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 931 TTTTGGTTAGGTGTTTCGCTCCCTGATGGTCCACCTTTAGGCACGGAACTTGCTGCAAAA 990
Query 421 CTCGAGATGTTTGCTTCGAATTTGTTCCTCCCCTGTTTCATCGCCATTAGTGGGTTGCAA 480
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 991 CTCGAGATGTTTGCTTCGAATTTGTTCCTCCCTTGTTTCATTGCCATTAGTGGGTTGCAA 1050
Query 481 ACCAATTTCTTTGAGATCACAGAGAGCCATGAGCACCATGTGGTAATGATTGAGATCATT 540
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1051 ACTAATTTCTTTGAGATAACAGAGAGCCATGAGCACCATGTGGTAATGATTGAGATAATT 1110
Query 541 CTCTTGATCACTTATGGATGCAAGTTCCTTGGAACAGCGGCTGCGTCTGCTTACTGCCAA 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1111 CTCTTGATCACTTATGGATGCAAGTTCCTTGGAACAGCAGCTGCGTCTGCTTACTGCCAA 1170
Query 601 ACGCAGATCGGAGACGCGCTTTGTTTGGCCTTCTTGATGTGTTGCCAAGGTATCATTGAA 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 ACGCAGATTGGAGACGCGCTTTGTTTGGCCTTCTTGATGTGTTGCCAAGGTATCATTGAA 1230
Query 661 GTCTACACTACTATCGTGTGGAAAGACGCTCAGGTTGTTGACACAGAATGCTTTAATCTG 720
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1231 GTCTACACTACTATCGTGTGGAAAGACGCTCAGGTTGTTGATACAGAATGCTTTAATCTG 1290
Query 721 GTGATCATCACGATTTTGTTGGTAACCGGGATTTCGCGGTTTCTCGTCGTGTACCTCTAC 780
|||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||||
Sbjct 1291 GTGATCATCACGATTTTGTTCGTAACTGGTATTTCCCGGTTCCTCGTGGTGTACCTCTAC 1350
Query 781 GACCCTTCAAAACGTTACAAAAGCAAAAGCAAACGAACAATCCTCAACACGAGACAACAC 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GACCCTTCAAAACGTTACAAAAGCAAAAGCAAACGAACAATCCTCAACACGAGACAACAT 1410
Query 841 AATCTTCAGCTACGTCTTCTCCTTGGCCTCTACAATGTTGAAAACGTTCCTTCTATGGTG 900
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1411 AATCTTCAGCTACGTCTTCTCCTTGGTCTCTATAATGTTGAAAACGTTCCTTCCATGGTT 1470
Query 901 AATCTTCTAGAAGCTACTTACCCGACACGGTTTAACCCGATCTCATTCTTTACTTTGCAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1471 AATCTTCTAGAAGCTACTTACCCGACACGGTTTAACCCGATCTCATTCTTTACGTTGCAC 1530
Query 961 CTCGTCGAGCTTAAAGGCCGAGCTCATGCAGTCCTTACACCGCACCATCAGATGAACAAA 1020
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1531 CTCGTCGAGCTTAAAGGCCGAGCTCATGCACTCCTTACACCACACCATCAGATGAACAAA 1590
Query 1021 CTTGACCCTAATACGGCCCAGTCCACTCACATCGTCAACGCCTTCCAGCGTTTCGAGCAA 1080
||||||||||| |||||||||||||| || || ||||||||||| |||||||| ||||||
Sbjct 1591 CTTGACCCTAACACGGCCCAGTCCACACATATTGTCAACGCCTTTCAGCGTTTTGAGCAA 1650
Query 1081 AAGTACCAGGGAGCTCTCATGGCGCAACACTTTACCGCAGCCGCGCCTTACTCGAGTATA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 AAGTACCAGGGAGCTCTCATGGCGCAACACTTTACCGCAGCCGCGCCTTACTCGAGTATA 1710
Query 1141 AACAACGACGTATGTACGCTTGCGCTCGACAAGAAGGCGACGTTAATTGTGATTCCGTTC 1200
||||||||| |||| ||||| || ||||||||||| ||||||||||| ||||||||||||
Sbjct 1711 AACAACGACATATGCACGCTGGCCCTCGACAAGAAAGCGACGTTAATCGTGATTCCGTTC 1770
Query 1201 CACAAGCAGTACGCGATTGACGGGACGGTCGGACAAGTCAACGGGCCCATCCGGAACATA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1771 CACAAGCAGTACGCGATTGACGGGACGGTCGGACAAGTCAACGGGCCCATCCGGACCATA 1830
Query 1261 AACCTTAACGTGTTGGAAGCGGCACCTTGTTCGGTCGCAATATTCATAGACCGAGGAGAG 1320
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1831 AACCTTAACGTGTTGGACGCGGCACCTTGTTCGGTGGCAATATTCATAGACCGAGGAGAG 1890
Query 1321 ACCGAGGGACGTCGCTCCGTGTTGATGACCAATACGTGGCATAACGTGGCGATGCTCTTC 1380
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1891 ACCGAGGGACGTCGGTCCGTGTTGATGACCAATACGTGGCAGAACGTTGCGATGCTCTTC 1950
Query 1381 ATCGGAGGCAAGGATGACGCGGAAGCGCTAGCGTTATGCATGAGGATGGCTGAAAAACCG 1440
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1951 ATCGGTGGCAAGGATGATGCGGAAGCGCTCGCGTTATGCATGAGGATGGCTGAAAAACCA 2010
Query 1441 GACCTTAACGTTACGATGATACATTTCCGTCACAAGAGCGCTCTTCAAGACGAGGATTAC 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2011 GACCTTAACGTTACGATGATACATTTCCGTCACAAGAGCGCTCTTCAAGACGAAGATTAC 2070
Query 1501 AGTGACATGTCTGAGTACAATCTAATCTGCGATTTCAAGAGCCATGCAGCGAACAAA-GG 1559
|| |||||||||||||||||||| ||| | |||||||||||| |||||||||||||| ||
Sbjct 2071 AGCGACATGTCTGAGTACAATCTCATCAGTGATTTCAAGAGCTATGCAGCGAACAAAGGG 2130
Query 1560 AAAAGTTCATTACGTGGAGGAGATAGTGAGAGATGGCGTGGAGACTACACAAGTGATTAG 1619
|||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2131 AAAA-TTCACTACGTAGAGGAGATAGTGAGAGATGGCGTGGAGACTACGCAAGTGATTAG 2189
Query 1620 CTCACTTGGAGATTCCTATGACATGGTGTTAGTAGGG-CGAGACCATGACCTAGAGTCTT 1678
||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2190 CTCACTTGGAGATGCCTATGACATGGTGTTAGT-GGGTCGAGACCATGACCTAGAGTCTT 2248
Query 1679 CGGTCTTGTACGGACTCACGGACTGGAGTGAGTGCCCTGAGTTAGGTGTGATCGGAGATA 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2249 CGGTCTTGTACGGACTCACGGACTGGAGTGAGTGCCCTGAGTTAGGTGTGATCGGAGATA 2308
Query 1739 TGTTGACGTCGCCAGATTTTCATTTCTCCGTACTTGTCGTTCATCAGCAGCAAGGAGACT 1798
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2309 TGTTGACGTCGCCGGATTTTCATTTCTCCGTACTTGTCGTTCATCAGCAGCAAGGAGACG 2368
Query 1799 -C--ACTGGCCATGGACGATAGTTATAAATTGCCTAAAGTCGAGCATCAGAAGATTGGAG 1855
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2369 ACTTACTGGCCATGGACGATAGTTATAAATTGCCTAACGTCGAGCATCAGAAGATTGGTG 2428
Query 1856 ATACTGGAATGCAACCACGTTTCTCCGCTGAAGAAGGTTTCACTACCATTGATCTCGGTA 1915
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2429 ATACTGGAATACAACAACGTTTCTCTGCTGAAGAAGGTTTCACTACCATTGATCTCGGTA 2488
Query 1916 AACACTAG 1923
||| ||||
Sbjct 2489 AACGCTAG 2496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95230433865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5