BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359584
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56340.1 | Symbols: ATCRT1 | RING/U-box superfamily protein ... 861 0.0
AT4G26400.2 | Symbols: | RING/U-box superfamily protein | chr4... 322 3e-87
AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1... 111 6e-24
> AT5G56340.1 | Symbols: ATCRT1 | RING/U-box superfamily protein
| chr5:22817560-22819657 FORWARD LENGTH=1635
Length=1635
Score = 861 bits (466), Expect = 0.0
Identities = 601/661 (91%), Gaps = 30/661 (5%)
Strand=Plus/Plus
Query 1 ATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAATAATGGAATCT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 244 ATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTAATGGAATCT 303
Query 61 GAGATCAAATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATGAGTGGTAATAGCGGT 120
|||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||
Sbjct 304 GAGATCAAATGTCCCTTTTGCCAAAGCGGATTCATCGAAGAAATGAGCGGTAATGGCGGT 363
Query 121 GGAGGTGGAGGTAGAGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACAGAC 180
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GGAGGTGGTGGCAGAGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACAGAC 423
Query 181 CGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGGAGACGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 424 CGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGAAGACGA 483
Query 241 AGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGaatgatgataatggtgatgaattgagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 484 AGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGAATGATGATAATGGTGATGACTTGACT 543
Query 301 a--a-tgctgatgggaatgataat-a-a-taataacagtaat------gTGTATTATCAT 348
| | |||||||||||||| ||| | | ||| ||||||||| |||||| ||||
Sbjct 544 ACTAATGCTGATGGGAATGGGAATGATAGTAACAACAGTAATAATAACGTGTATCGTCAT 603
Query 349 CATCGAGCTAGGCGGCATGGTGGAGAGATTGATTTGGATAGAGAGTTTGAGTCTATCTTG 408
|||||||||||| | |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 604 CATCGAGCTAGGAGACATGGTGGAGAGATTGATTTAGATAGAGAGTTTGAATCTATCTTG 663
Query 409 AGGCGAAGACGAAGAAGCTCGGGGAATATATTGCAGTTACTTCAAGGGATTCGTGCAGGG 468
||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 664 AGGAGAAGACGAAGAAGCTCAGGGAATATATTGCAGTTGCTTCAAGGGATTCGTGCAGGG 723
Query 469 ATTGCTTCAGAGTATGAAAGTTCTGATAACGATTGGGATAATTCTCGTGAGAGGGATAGT 528
|||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 724 ATTGCTTCTGAGTATGAAAGCTCTGATAACAATTGGGATAATTCTCGAGAGAGGGATAG- 782
Query 529 AATAACAATAGAGTTATAATGATCAATCCGTATAACCAATCGCTCGTTGTTCAGGGATCT 588
| | |||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 783 A---------G--TTATAATGATTAATCCGTATAACCAATCGCTAGTTGTTC------CT 825
Query 589 TCAGATCAAAATCCGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCT 648
|| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TCGGATCAGAATCAGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCT 885
Query 649 G 649
|
Sbjct 886 G 886
> AT4G26400.2 | Symbols: | RING/U-box superfamily protein | chr4:13344848-13346574
REVERSE LENGTH=1390
Length=1390
Score = 322 bits (174), Expect = 3e-87
Identities = 404/511 (79%), Gaps = 32/511 (6%)
Strand=Plus/Plus
Query 1 ATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAATAAT-GGAATC 59
||| |||||||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 215 ATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTTATTGGTGCC 274
Query 60 TGAGATCAAATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATGAGTGGTAATAGCGG 119
||||||||||| |||||||| |||||||| || |||| |||||||| || | |
Sbjct 275 -GAGATCAAATGCCCCTTTTGCCAAAGCGGGTTTGTCGAGGAAATGAGCCGTGAGATTAA 333
Query 120 TGGAGGTGG-AGGTAG-AGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACA 177
||| || | || ||| || | |||| || |||||||| | || | |||||||| |||
Sbjct 334 TGGCGGCAGCAG-TAGCAGTC-TAAGGGAGGTTCAAGACCCTGAGATTGATTTTGGTACA 391
Query 178 GACCGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGGAGA 237
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 392 GACCGTGCATTGTCTCTATGGGGTCCAATCTTGCTTGGAATGATGAGTAATCCTCGTAGA 451
Query 238 CGAAGAAGGTTTAGAAG-ATCAGAGTTTGGTGAAGAGaatgatgataatggtga-tgaat 295
|| ||||||||||| || | |||||||||||| || |||||||| ||| | || ||
Sbjct 452 CGTAGAAGGTTTAGGAGGA-CAGAGTTTGGTGTGGATAATGATGA----GGTCAATGTAT 506
Query 296 -tgagtaatgctgatgggaatgataa--ta-ataataa-cagta-atg-TGTATTATCAT 348
||| | ||| |||||| ||||| | | ||| | | | | | || | || || |
Sbjct 507 CTGA-TGATGTTGATGGAAATGACAGCGTCGATATTGATC-G-ACATCATC-ATCGTCGT 562
Query 349 CATCG--AGCTAGGCGGCATGGTGGAGAGATTGATTTGGATAGAGAGTTTGAGTCTATC- 405
||||| | | |||| || ||| ||||||||||||| || ||||||||||||||||||
Sbjct 563 CATCGCCA-C-AGGCAACAAGGTAGAGAGATTGATTTAGACAGAGAGTTTGAGTCTATCC 620
Query 406 TTGAGGCGAAGACGAAGAAGCTCGGGGAATATATTGCAGTTACTTCAAGGG-ATTCGTGC 464
|| ||| | ||||| |||||||| | | |||||||||||| ||||| ||| ||||||||
Sbjct 621 TT-AGGAGGAGACGGAGAAGCTCAGCTACTATATTGCAGTTGCTTCA-GGGTATTCGTGC 678
Query 465 AGGGATTGCTTCAGAGTATGAAAGTTCTGAT 495
|||||||||||| |||||||| || || |||
Sbjct 679 AGGGATTGCTTCTGAGTATGAGAGCTCGGAT 709
> AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1:20729182-20731283
REVERSE LENGTH=1650
Length=1650
Score = 111 bits (60), Expect = 6e-24
Identities = 85/97 (88%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 10 AGGTATTGGTGTCACATGTGTTCACAAA-TGGTGAATCCAATAATGGAATCTGAGATCAA 68
|||||||||||||| |||||||| |||| | ||||||||| | |||||| ||||||||||
Sbjct 326 AGGTATTGGTGTCATATGTGTTCTCAAACT-GTGAATCCAGTCATGGAAGCTGAGATCAA 384
Query 69 ATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATG 105
|||||||||||||||||| || || | |||||||||
Sbjct 385 ATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATG 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5