BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg359584 Length=649 Score E Sequences producing significant alignments: (Bits) Value AT5G56340.1 | Symbols: ATCRT1 | RING/U-box superfamily protein ... 861 0.0 AT4G26400.2 | Symbols: | RING/U-box superfamily protein | chr4... 322 3e-87 AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1... 111 6e-24 > AT5G56340.1 | Symbols: ATCRT1 | RING/U-box superfamily protein | chr5:22817560-22819657 FORWARD LENGTH=1635 Length=1635 Score = 861 bits (466), Expect = 0.0 Identities = 601/661 (91%), Gaps = 30/661 (5%) Strand=Plus/Plus Query 1 ATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAATAATGGAATCT 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 244 ATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTAATGGAATCT 303 Query 61 GAGATCAAATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATGAGTGGTAATAGCGGT 120 |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| Sbjct 304 GAGATCAAATGTCCCTTTTGCCAAAGCGGATTCATCGAAGAAATGAGCGGTAATGGCGGT 363 Query 121 GGAGGTGGAGGTAGAGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACAGAC 180 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 GGAGGTGGTGGCAGAGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACAGAC 423 Query 181 CGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGGAGACGA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 424 CGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGAAGACGA 483 Query 241 AGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGaatgatgataatggtgatgaattgagt 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 484 AGAAGGTTTAGAAGATCAGAGTTTGGTGAAGAGAATGATGATAATGGTGATGACTTGACT 543 Query 301 a--a-tgctgatgggaatgataat-a-a-taataacagtaat------gTGTATTATCAT 348 | | |||||||||||||| ||| | | ||| ||||||||| |||||| |||| Sbjct 544 ACTAATGCTGATGGGAATGGGAATGATAGTAACAACAGTAATAATAACGTGTATCGTCAT 603 Query 349 CATCGAGCTAGGCGGCATGGTGGAGAGATTGATTTGGATAGAGAGTTTGAGTCTATCTTG 408 |||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 604 CATCGAGCTAGGAGACATGGTGGAGAGATTGATTTAGATAGAGAGTTTGAATCTATCTTG 663 Query 409 AGGCGAAGACGAAGAAGCTCGGGGAATATATTGCAGTTACTTCAAGGGATTCGTGCAGGG 468 ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 664 AGGAGAAGACGAAGAAGCTCAGGGAATATATTGCAGTTGCTTCAAGGGATTCGTGCAGGG 723 Query 469 ATTGCTTCAGAGTATGAAAGTTCTGATAACGATTGGGATAATTCTCGTGAGAGGGATAGT 528 |||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||||| Sbjct 724 ATTGCTTCTGAGTATGAAAGCTCTGATAACAATTGGGATAATTCTCGAGAGAGGGATAG- 782 Query 529 AATAACAATAGAGTTATAATGATCAATCCGTATAACCAATCGCTCGTTGTTCAGGGATCT 588 | | |||||||||| |||||||||||||||||||| ||||||| || Sbjct 783 A---------G--TTATAATGATTAATCCGTATAACCAATCGCTAGTTGTTC------CT 825 Query 589 TCAGATCAAAATCCGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCT 648 || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 826 TCGGATCAGAATCAGAATCATCCTTCATTGACTTCACTTGGAGATTACTTCATTGGACCT 885 Query 649 G 649 | Sbjct 886 G 886 > AT4G26400.2 | Symbols: | RING/U-box superfamily protein | chr4:13344848-13346574 REVERSE LENGTH=1390 Length=1390 Score = 322 bits (174), Expect = 3e-87 Identities = 404/511 (79%), Gaps = 32/511 (6%) Strand=Plus/Plus Query 1 ATGGCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAATAAT-GGAATC 59 ||| |||||||||||||||||||||||||||||||||||||||||||| | || || | Sbjct 215 ATGTCAGCTAGGTATTGGTGTCACATGTGTTCACAAATGGTGAATCCAGTTATTGGTGCC 274 Query 60 TGAGATCAAATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATGAGTGGTAATAGCGG 119 ||||||||||| |||||||| |||||||| || |||| |||||||| || | | Sbjct 275 -GAGATCAAATGCCCCTTTTGCCAAAGCGGGTTTGTCGAGGAAATGAGCCGTGAGATTAA 333 Query 120 TGGAGGTGG-AGGTAG-AGGCATAAGAGATGTTCAAGATTCAGAAACCGATTTTGGAACA 177 ||| || | || ||| || | |||| || |||||||| | || | |||||||| ||| Sbjct 334 TGGCGGCAGCAG-TAGCAGTC-TAAGGGAGGTTCAAGACCCTGAGATTGATTTTGGTACA 391 Query 178 GACCGTGCATTGTCTCTATGGGCACCAATCTTGCTTGGAATGATGAGTAGTCCTCGGAGA 237 |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| Sbjct 392 GACCGTGCATTGTCTCTATGGGGTCCAATCTTGCTTGGAATGATGAGTAATCCTCGTAGA 451 Query 238 CGAAGAAGGTTTAGAAG-ATCAGAGTTTGGTGAAGAGaatgatgataatggtga-tgaat 295 || ||||||||||| || | |||||||||||| || |||||||| ||| | || || Sbjct 452 CGTAGAAGGTTTAGGAGGA-CAGAGTTTGGTGTGGATAATGATGA----GGTCAATGTAT 506 Query 296 -tgagtaatgctgatgggaatgataa--ta-ataataa-cagta-atg-TGTATTATCAT 348 ||| | ||| |||||| ||||| | | ||| | | | | | || | || || | Sbjct 507 CTGA-TGATGTTGATGGAAATGACAGCGTCGATATTGATC-G-ACATCATC-ATCGTCGT 562 Query 349 CATCG--AGCTAGGCGGCATGGTGGAGAGATTGATTTGGATAGAGAGTTTGAGTCTATC- 405 ||||| | | |||| || ||| ||||||||||||| || |||||||||||||||||| Sbjct 563 CATCGCCA-C-AGGCAACAAGGTAGAGAGATTGATTTAGACAGAGAGTTTGAGTCTATCC 620 Query 406 TTGAGGCGAAGACGAAGAAGCTCGGGGAATATATTGCAGTTACTTCAAGGG-ATTCGTGC 464 || ||| | ||||| |||||||| | | |||||||||||| ||||| ||| |||||||| Sbjct 621 TT-AGGAGGAGACGGAGAAGCTCAGCTACTATATTGCAGTTGCTTCA-GGGTATTCGTGC 678 Query 465 AGGGATTGCTTCAGAGTATGAAAGTTCTGAT 495 |||||||||||| |||||||| || || ||| Sbjct 679 AGGGATTGCTTCTGAGTATGAGAGCTCGGAT 709 > AT1G55530.1 | Symbols: | RING/U-box superfamily protein | chr1:20729182-20731283 REVERSE LENGTH=1650 Length=1650 Score = 111 bits (60), Expect = 6e-24 Identities = 85/97 (88%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 10 AGGTATTGGTGTCACATGTGTTCACAAA-TGGTGAATCCAATAATGGAATCTGAGATCAA 68 |||||||||||||| |||||||| |||| | ||||||||| | |||||| |||||||||| Sbjct 326 AGGTATTGGTGTCATATGTGTTCTCAAACT-GTGAATCCAGTCATGGAAGCTGAGATCAA 384 Query 69 ATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATG 105 |||||||||||||||||| || || | ||||||||| Sbjct 385 ATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATG 421 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31346107728 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5