BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359589
Length=405
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44240.1 | Symbols: | Protein of Unknown Function (DUF239) ... 577 3e-164
AT2G44220.1 | Symbols: | Protein of Unknown Function (DUF239) ... 313 1e-84
AT1G10750.1 | Symbols: | Protein of Unknown Function (DUF239) ... 63.9 1e-09
> AT2G44240.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18289824-18292345 FORWARD LENGTH=1490
Length=1490
Score = 577 bits (312), Expect = 3e-164
Identities = 373/403 (93%), Gaps = 2/403 (0%)
Strand=Plus/Plus
Query 1 AGCGATGGATACCAAAAGACAGGATGCTACAATCTCCTGTGCGGCGGTTTTGTTCAGACG 60
||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||
Sbjct 825 AGCGATGGATACCAAAAGACAGGATGCTATAATCTCGTCTGCGGTGGTTTTGTTCAGACG 884
Query 61 AACAACCAGTACTCTGTAGGTGGATCCTACAATACCGTGTCAGAATACGACGGAGCTCAA 120
| |||||| ||| ||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 885 ACCAACCAATACACTGTAGGTGGATCCTACGTTACCGCGTCACAATACGACGGAGCTCAA 944
Query 121 CTAAG-TCTCAACCTACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGCTAAAGAT 179
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 945 CT-AGTTCTCAACCTACTTATATGGAAGGACCCAAAAACAGGAAACTGGTGGCTAAAGAT 1003
Query 180 AAATGACAATGACATTATCGGGTACTGGCCCGGCTCGTTGTTCAATTCTCTAGGAGATGG 239
|||||||| || |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1004 TAATGACAACGATGTTATAGGGTACTGGCCTGGCTCGTTGTTCAATTCTCTAGGAGATGG 1063
Query 240 AGCTATAAAAGTTGAATGGGGAGGCGAAATCTTCACGCAAACCAGTAAGACACACACAAC 299
||||||||||||||||||||| |||||||||||| ||| ||||||| | | |||||||||
Sbjct 1064 AGCTATAAAAGTTGAATGGGGTGGCGAAATCTTCGCGCCAACCAGTGATAGACACACAAC 1123
Query 300 CACCGATATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTAAGAAAGCGAGCTATGTACG 359
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1124 CACCGATATGGGAAGTGGACATTTTGCAGAGGAAGGGATTAAGAAAGCGAGCTATGTAAA 1183
Query 360 AAATATTATGATAGTTGATGGGACAAATGCTCTGAGAGAACCA 402
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 AAATATTATGATAGTTGATGGGACAAATGCTCTGAGAGAACCA 1226
> AT2G44220.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:18283803-18285837 FORWARD LENGTH=1359
Length=1359
Score = 313 bits (169), Expect = 1e-84
Identities = 336/413 (81%), Gaps = 25/413 (6%)
Strand=Plus/Plus
Query 4 GATGGATACC-AAAAGACAGGATGCTACAATCTCCTGTGCGGC-GGTTTTGTTCAGACGA 61
||||| |||| |||| || ||||||||||| || || ||| | ||||||||||| ||||
Sbjct 688 GATGGGTACCGAAAA-ACGGGATGCTACAACCTTCTCTGC-TCAGGTTTTGTTCAAACGA 745
Query 62 ACAA-CCAGTACTCTGTAGGTGGATCCTA-CAATACCGTGTCA-GAATA-CGACGGAGCT 117
|| | | ||| | |||||||||| | | || ||| ||||| | || || ||| ||
Sbjct 746 GTAATCGA-TACACCGTAGGTGGAT-CAATCACCACCATGTCACG-CTACCG-TGGAACT 801
Query 118 CAACTAAG-TCTCAACC-TACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGCTAA 175
||| || | |||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 802 CAA-TATGATCTC-TCCGTACTTATATGGAAGGACCAAAAAACAGGAAACTGGTGGCTTA 859
Query 176 -AGATAAATGACAATGACATTATCGGGTACTGGCCCGGCTCGTTGTTCAATTCTCTAGGA 234
|| | ||||| || ||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct 860 GAG-TCAATGAAAAAGACGTTATTGGGTACTGGCCAGGCTCGTTGTTCAATTCTCTAGGA 918
Query 235 -GATGGAGCTATAAAAGTTGAATGGGGAGGCGAAATC-TTCACGCAAA--CCAGTAAGAC 290
|| | ||||| | ||||||||||||||| |||||| || || |||| || || ||
Sbjct 919 AGA-GAAGCTACGAGAGTTGAATGGGGAGGTGAAATCATTAACTCAAAGACCGGTGGGAG 977
Query 291 ACACACAACCACCGATATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTAAGAAAGCGAG 350
|||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 978 ACACACTACCACAGATATGGGAAGTGGGCATTTTGCAGATGAAGGTTTTAAGAAAGCAAG 1037
Query 351 CTATGT-ACGAAATATTATGATAGTTGATGGGACAAATGCTCTGAGAGAACCA 402
|||| | | ||| | ||| |||||||||||| || ||| |||| |||||||||
Sbjct 1038 CTATTTCAGGAA-TCTTAAGATAGTTGATGGAACCAATACTCTTAGAGAACCA 1089
> AT1G10750.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr1:3574807-3578474 REVERSE LENGTH=1747
Length=1747
Score = 63.9 bits (34), Expect = 1e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 307 ATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTA 340
||||||||||||||||||||||||||||||||||
Sbjct 1353 ATGGGAAGTGGGCATTTTGCAGAGGAAGGGTTTA 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19152012369
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5