BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359594
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15470.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1803 0.0
> AT3G15470.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:5216262-5220218 REVERSE LENGTH=3370
Length=3370
Score = 1803 bits (976), Expect = 0.0
Identities = 1018/1039 (98%), Gaps = 0/1039 (0%)
Strand=Plus/Plus
Query 514 ATGACGATGGAGGAGTTTGAGATGTGTGTTGGACATTCTCCCATTGTTCAGGAGCTTATG 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 ATGACGATGGAGGAGTTTGAGATGTGTGTTGGACATTCTCCCATTGTTCAGGAGCTTATG 1247
Query 574 AGAAGACAGAACGTTGAGGATTCTGATAAGAACACGTCTAAGGAAAACGAAGACAGTGGG 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AGAAGACAGAACGTTGAGGATTCTGATAAGAACACGTCTAAGGAAAACGAAGACAGTGGG 1307
Query 634 AATAGTAATAAGGATAATGCATCGAAGTCTAAGAAGAAAGGAAGTTGGTTTAAGAGTATT 693
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1308 AATAGTAATAAGGATAATGCATCCAAGTCTAAGAAGAAAGGAAGTTGGTTTAAGAGTATT 1367
Query 694 AAGAGTGTTGCAAGTAGCATGACTGGTCATAGCAAAGAGAGACGAAGCAGCGATGATAGA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 AAGAGTGTTGCAAGTAGCATGACTGGTCATAGCAAAGAGAGACGAAGCAGCGATGATAGA 1427
Query 754 GATACATCGTCAGAGAGAGGTGGTCGGAGGTCGAGCTCTGCTACTGATGATTCTCAGGAA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 GATACATCGTCAGAGAGAGGTGGTCGGAGGTCGAGCTCTGCTACTGATGATTCTCAGGAA 1487
Query 814 TCTTCTTTTCACGGGCCGGAAAGAGTTAGGGTTAGACAGTATGGGAAATCATCTAAAGAG 873
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TCTTCTTTTCATGGGCCGGAAAGAGTTAGGGTTAGACAGTATGGGAAATCATCTAAAGAG 1547
Query 874 CTCACGGCATTGTACAAGACGCAGGAGATTCAAGCGCATAATGGTTCTATTTGGAGCATT 933
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CTCACGGCATTGTACAAAACGCAGGAGATTCAAGCGCATAATGGTTCTATTTGGAGCATT 1607
Query 934 AAGTTTAGTTTGGATGGTAAATATCTTGCTAGTGCTGGTGAGGATTGCATCGTTCATATC 993
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1608 AAGTTTAGTTTGGATGGTAAATATCTTGCTAGTGCTGGTGAGGATTGCATCATTCACATC 1667
Query 994 TGGCAAGTCGTCGAGGCTGAGAAGAAGGGAGAGTTGCTACTTGATAGACCGGAACTGTTG 1053
||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1668 TGGCAAGTCGTTGAGGCTGAGAAGAAGGGTGAGTTGTTACTTGATAGACCGGAACTGTTG 1727
Query 1054 CTTTTGGCTAATAATGGGTCTCCAGAACCAACTACTATGTCACCAAGGAGAAGAGGGAGA 1113
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1728 CTTTTGGCTACTAATGGGTCTCCAGAACCGACTACTATGTCACCAAGGAGAAGAGGGAGA 1787
Query 1114 ACTTCTATAAGTAGAAAGTCATTGAGTTTAGAGAACATATTTGTTCCAGATTCTCTTTTC 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 ACTTCTATAAGTAGAAAGTCATTGAGTTTAGAGAACATATTTGTTCCAGATTCTCTTTTC 1847
Query 1174 GGGCTTTCGGAAAAGCCCTTTTGTTCCTTTCAGGGACATGTGGATGATGTACTTGACCTT 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 GGGCTTTCGGAAAAGCCCTTTTGTTCCTTTCAGGGACATGTGGATGATGTACTTGACCTT 1907
Query 1234 GCTTGGTCCAAGTCTCAGTATTTGCTTTCTTCATCAATGGATAAAACAGTTCGTTTGTGG 1293
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1908 GCTTGGTCCAAGTCTCAGCATTTGCTCTCTTCATCAATGGATAAAACAGTTCGTTTGTGG 1967
Query 1294 AACTTGTCCAGCCAGACTTGCTTGAAAGTATTTTCGCACAGTGATTACGTGACTAGCATC 1353
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1968 AATTTGTCCAGCCAGACTTGCTTGAAAGTATTTTCGCACAGTGATTACGTGACTTGCATT 2027
Query 1354 CAATTTAATCCGGTCGATGATAGATACTTTATCAGCGGATCCTTAGATGCAAAAGTTCGC 1413
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2028 CAATTTAATCCGGTTGATGATAGATACTTCATCAGTGGATCCTTAGATGCAAAAGTTCGC 2087
Query 1414 GTCTGGAGCATTCCAGATCGTCAAGTAGTTGACTGGTATGATCTTCATGAGATGGTCACT 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 GTCTGGAGCATTCCAGATCGTCAAGTAGTTGACTGGTATGATCTTCATGAGATGGTCACT 2147
Query 1474 TCTGCTTGCTACACTCCAGATGGTCAGGGTGCGTTGGTTGGTTCATACAAAGGTAGCTGT 1533
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2148 TCTGCTTGCTACACTCCAGATGGTCAGGGTGTGTTGGTTGGTTCATACAAAGGTAGCTGT 2207
Query 1534 CGCATGTATAGTGCATCAG 1552
|| ||||| ||||||||||
Sbjct 2208 CGGATGTACAGTGCATCAG 2226
Score = 695 bits (376), Expect = 0.0
Identities = 472/516 (91%), Gaps = 15/516 (3%)
Strand=Plus/Plus
Query 1 ATGGGAGCCTCGAAGTTCGACGTTTGGATCTCTGAACCTGCTTCTGTCTCCGAGAGACGT 60
|||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 579 ATGGGAGCTTCGAAGTTCGACGTTTGGACCTCTGAACCTGCTTCTGTCTCTGAGAGGCGT 638
Query 61 TCCAAGCTTTTAAACGAAATGGGTCTTAGCCGTGACCCGGTTCTCTCCCGGTTAAAACCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 TCCAAGCTTTTAAACGAAATGGGTCTTAGCCGTGACCCGGTTCTCTCCCGGTTAAAACCC 698
Query 121 GTTTCGGATTC--C-AGCTTCAAAGAAACCGGAGCCGGCAGCTCCGACATTTCCCGATCG 177
||||| ||||| | |||| |||||| |||||||||| | ||| ||| ||||| ||||||
Sbjct 699 GTTTCAGATTCTTCCAGCTCCAAAGATACCGGAGCCGCCGGCTTCGAGATTTCTCGATCG 758
Query 178 ATCTCGTGTAATCAATTGGCTCGGCGAGATCATGGAGAGTGTTTTGAAACTGTCGGCGGT 237
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 759 ATCTCGTGTAATCAATTGGCTCGGCGAGATCATGGAGAGTGTTCTGAAAGTGTCGGCGGT 818
Query 238 TGTGCTTCTTGCATCGTGAGATCGAAATCCGACATTACCACTAGCCAATGTGGTGATCGT 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TGTGCTTCTTGTATCGTGAGATCGAAATCCGACATTACCACTAGCCAATGTGGTGATCGT 878
Query 298 GAACGTCGATATACGTCTCTTGGTAATTCTTGTTCTTGTTCAGTCTCTAAACTCTCTGTT 357
|| |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct 879 GACCGTCGATATACGTCTCCTGGTAATCCTTGTTCTTGTTCCGTCTCTAAACTCTCTGTT 938
Query 358 CGTCATCCTTCACATTCAGAGATCAGTAGAACCAGCCCACCATTTGTCAATTGCAGTTTG 417
| |||| ||||||||||||||||||||||||||||| | |||||||| ||||||||| |
Sbjct 939 CATCATTCTTCACATTCAGAGATCAGTAGAACCAGCTCGCCATTTGTGAATTGCAGTGTA 998
Query 418 GGATCAGTTAGTGCTGATTCGTGTGAGAATTCATTGCGGTTAAATGGAGATACTGACTGT 477
|||||||||||||||||||| | || |||||||||||||||| |||| |||
Sbjct 999 GGATCAGTTAGTGCTGATTC-----A---TT----GCGGTTAAATGGAGATTCTGATTGT 1046
Query 478 GTACTGAGCGAGAGTGTAGTGAATGAGGAAGTGGAA 513
|||||||| |||||||||||||||||||||||||||
Sbjct 1047 GTACTGAGAGAGAGTGTAGTGAATGAGGAAGTGGAA 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5