BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359596
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 928 0.0
> AT5G52870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G64080.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:21427947-21429447 REVERSE LENGTH=1305
Length=1305
Score = 928 bits (502), Expect = 0.0
Identities = 728/828 (88%), Gaps = 51/828 (6%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCTTAGCTTTATGAAATTCTGGTTAACCAACAACAACACAACCATCAAACCT 60
||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 81 ATGGAAGCTCTTACCTTTATGAAATTCTGGTTAA-C--CAACAACACAACCATCAAACCT 137
Query 61 CGCCGTGAAATCAGAATCTCAGAATCCGCCGTCGATTCCACCACCGCATCAGAAGATCCC 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 138 CGCCGTGAAATCAGAATCTCAGAATCCGCCGTCGATTCCACCACCGGATCAGAAGATCCC 197
Query 121 GAACTTGACCTCTACGAAGGAGACGATTCCTTCTTCGAACTCGAGATCTCTCTCTCCGAT 180
|| |||||||||| ||||||||| |||||||||||||| ||| ||||||||||||| |||
Sbjct 198 GACCTTGACCTCTGCGAAGGAGAGGATTCCTTCTTCGAGCTCAAGATCTCTCTCTCGGAT 257
Query 181 TTC-AAA-A-C---AGAAAAACAGAGACTCG--------A-AAC--GAA-GACGTACTCT 222
||| ||| | | ||||||||||||||||| | ||| || |||||||||
Sbjct 258 TTCAAAACACCTAAAGAAAAACAGAGACTCGAAACAACAACAACAACAACAACGTACTCT 317
Query 223 GTTTCTAACAAAAGCAAAGTCCTTCCTTTCGTTGATATCACTACAAAACAACAACAATCT 282
||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 318 GTTTCTAACAAAAGCAAAGTCCTTCCTTTCGTTGATATCTCTTCAAAACCCCAACAATCT 377
Query 283 CCGATCACTCTTTTGAAATCCGGACCAAAGTTTCGTGCTTTCTCATTCAAGAAGTCTGAA 342
|||| |||||||||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 378 CCGACCACTCTTTTGAAATCCGGTCAAAAGTTTCGTGCTTTCTCATTCAAGAAGTCAGAA 437
Query 343 AAGTCAACGACGACTGAGAAGAAGAAAGAAG--AA-AA-C--A--A----C-A-G--AG- 385
||||||||||||||||||||||||||||||| || || | | | | | | ||
Sbjct 438 AAGTCAACGACGACTGAGAAGAAGAAAGAAGAAAACAACCGAACTAGTCTCAACGTAAGA 497
Query 386 -TC-GA--CGAC---G-----AC-ACAACGAGCTTCAGAAAAACGGCGAGCATTGCGAGA 432
|| || |||| | || ||||| || ||||||||||| || ||||||||||||
Sbjct 498 TTCAGAGTCGACGATGAAACAACAACAACAAGTTTCAGAAAAACAGCAAGCATTGCGAGA 557
Query 433 TTACAACAAACAGACGACACGATGTTCGACGACTCTGTTTCGAAGAGATTCTTCAGTCTC 492
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 558 TCACAACAAACAGACGACACGATGTTCGACGACTCTGTTTCAAAGAGATTCTTCAGTCTC 617
Query 493 ATAAAACCTTTATACACCAAATCAACGAAGAAACATTCATCCTCGACGATTACATCTCCG 552
|| |||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||||
Sbjct 618 ATTAAACCTTTGTACACTAAATCAACGAAGAAGCAGTCATCGTCGACGATTACATCTCCG 677
Query 553 TCGTCATCACCGGCGGCAAGGGAGAAACAGAGGAGTAATATTCCGTCGGGGATTCGAAGT 612
|||| ||||||||| | || |||||||||||||||||||||||||||||||| |||||
Sbjct 678 ACGTCTTCACCGGCGACGAGAGAGAAACAGAGGAGTAATATTCCGTCGGGGATGAGAAGT 737
Query 613 GTAAGGAGACAACTTGGGAAGAGTCGGTCAGCTTCTGCGGCGATCGGAGGAATGTCTCCG 672
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 GTGAGGAGACAACTTGGGAAGAGTCGGTCAGCTTCTGCGGCGATCGGAGGAATGTCTCCG 797
Query 673 GCGAACAGAGTTGATGAGTCTTTACAAGTTCAACAAGATGGTATTCAAAGTGCGATTCTT 732
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 798 GCGAACAGAATCGATGAGTCTTTACAAGTTCAACAAGATGGGATTCAAAGTGCGATTCTT 857
Query 733 CATTGCAAGAGATCGTTTCACGGCTCCAGAGATTCGTATTTGTTTTCA 780
|||||||||| ||||||||| ||||| ||||| || | | |||| |||
Sbjct 858 CATTGCAAGAAATCGTTTCATGGCTCGAGAGAATCTTCTCTGTTATCA 905
Score = 163 bits (88), Expect = 2e-39
Identities = 98/103 (95%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 762 AGATTCGTATTTGTTTTCAAGGATTTCAAGTGATTCAATGTCGGAGAAATCGATTGATAG 821
|||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 959 AGATTCTTATTTGTTTTCAAGGATTTCAAGTGATTCAATTTCGGAGAAATCAATGGATAG 1018
Query 822 CTTGACTTCAATTAAGGAACAGCGGGAGAAGATTAGCGATTAG 864
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 CTTGACTTCAATTAAGGAACAGAGGGAGAAGATTAGCGATTAG 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5