BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359609

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11030.1 | Symbols: TBL32 | TRICHOME BIREFRINGENCE-LIKE 32 |...   422    1e-117
  AT3G61020.1 | Symbols:  | pseudogene, similar to P0034A04.28, s...  67.6    7e-11 


> AT3G11030.1 | Symbols: TBL32 | TRICHOME BIREFRINGENCE-LIKE 32 
| chr3:3457227-3459380 REVERSE LENGTH=1509
Length=1509

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 314/352 (89%), Gaps = 19/352 (5%)
 Strand=Plus/Plus

Query  1    ATGACATCGGCGTTGTTATCACCGTCGCACCGTAGAAAACGCCGTCTCACTCATTTCTTC  60
            |||||| |||||||||| ||||||||  |||||||||||||||||||||| || ||||||
Sbjct  81   ATGACAACGGCGTTGTTTTCACCGTCTAACCGTAGAAAACGCCGTCTCACACACTTCTTC  140

Query  61   TTCACCGTACTCGCTTTCATCTTACTCGCCGCCTTCATCTACGGTCATC-ATTTCATCTC  119
            |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct  141  TTCACCGTACTCGCTTTCATCTTACTCGCCGCCTTCATCTACGGCCA-CGATTTCATCTC  199

Query  120  TTTCTCCCGTCGATCTCTTCACTCTCCGACAATCGTCCACCAATCCGCAATCGTCGTTGT  179
            |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  200  TTTCTCTCGTCGATCTCTTCACTCTCCGACGATCGTCCACCAATCCGCAATCGTCGTTGT  259

Query  180  AGTGGACGAacctcctccgcctccacca-c--c---------g--t-ctcctccacctcc  224
            ||| |||||||||||||||||||||||| |  |         |  | |||||||||| ||
Sbjct  260  AGTTGACGAACCTCCTCCGCCTCCACCAACATCTCCTCCTCCGCCTTCTCCTCCACCACC  319

Query  225  gtctcctccaccaccgtctcctcctccgccatctccaccaccacctGCTTTTGC-GTTGG  283
            ||||||||||||||| |||||||| ||||||||||| || |||||||||||||| || ||
Sbjct  320  GTCTCCTCCACCACCATCTCCTCCACCGCCATCTCCTCCGCCACCTGCTTTTGCAGTAGG  379

Query  284  GGAAGACGCCGGAAGGATGCGATGTGTTCAAAGGGAATTGGGTCAAAGACTG  335
              || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  380  TAAA-ACGCCGGAAGGATGCGATGTCTTCAAAGGGAATTGGGTCAAAGACTG  430


> AT3G61020.1 | Symbols:  | pseudogene, similar to P0034A04.28, 
several hypothetical proteins - Arabidopsis thaliana; blastp 
match of 43% identity and 2.2e-46 P-value to GP|29837187|dbj|BAC75569.1||AP004333 
P0034A04.28 {Oryza sativa (japonica 
cultivar-group)} | chr3:22575591-22577497 FORWARD LENGTH=1907
Length=1907

 Score = 67.6 bits (36),  Expect = 7e-11
 Identities = 40/42 (95%), Gaps = 0/42 (0%)
 Strand=Plus/Plus

Query  293  CGGAAGGATGCGATGTGTTCAAAGGGAATTGGGTCAAAGACT  334
            |||||| ||||||||||||||||||||||||||||| |||||
Sbjct  108  CGGAAGTATGCGATGTGTTCAAAGGGAATTGGGTCATAGACT  149



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15633269939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5