BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359610
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66030.1 | Symbols: ATGRIP, GRIP | Golgi-localized GRIP doma... 878 0.0
> AT5G66030.1 | Symbols: ATGRIP, GRIP | Golgi-localized GRIP domain-containing
protein | chr5:26404894-26410255 REVERSE LENGTH=2836
Length=2836
Score = 878 bits (475), Expect = 0.0
Identities = 629/696 (90%), Gaps = 39/696 (6%)
Strand=Plus/Plus
Query 1 ATGTCCGAAGACAAGGAATCTGATGTGG-T--CGCAGAAGAGGAGAGCCA--TG-TCCAA 54
|||||||||||||||||||||||||||| | | ||||||||||||||| || || ||
Sbjct 231 ATGTCCGAAGACAAGGAATCTGATGTGGTTGGAGAAGAAGAGGAGAGCCATGTGATCAAA 290
Query 55 GAAGAT---GACATAAATGATGCGTCAAACGAGAATCTGACGACAGAAAATGATGATCAG 111
|||||| || |||||||||| || ||||||| ||| ||||||||||| |||||||
Sbjct 291 GAAGATAAAGAGTTAAATGATGCCTCCAACGAGACTCT---GACAGAAAATGGTGATCAG 347
Query 112 CTACTCCAAACGATTGCTGAACTGAGATTAGAAAATGACTTTCTCAGATCCCAATTT-AA 170
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 348 CTACTCCAAATGATTGCTGAACTGAGATTAGAAAATGACTTTCTCAGATCCCAATTTGAG 407
Query 171 GGA-TCAA-G-T-A-G-A--GCAAAGTAGG--TCT-C----A-C----CAAGTGGAAGCG 210
||| |||| | | | | | |||| ||||| ||| | | | ||||||||||||
Sbjct 408 GGACTCAAGGATGAGGTAGCGCAAGGTAGGTCTCTCCAGAAAGCTGAGCAAGTGGAAGCG 467
Query 211 GA-----C-CAATTGAAACAACTTCAAGAACAGGTCGCATCATTGAGCAGAGAAATTGAT 264
|| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GACTCTGCTCAGCTGAAACAACTTCAAGAACAGGTCGCATCATTGAGCAGAGAAATTGAT 527
Query 265 GTGGAAAAGCAAACTCGAGTTGCAGCTGAGCAAGCTCTTGAGCATCTTAGGGAAGCATAC 324
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 528 GTGGAAAAACAAACTCGAGTTGCAGCTGAGCAAGCTCTTGAGCATCTAAGGGAAGCATAC 587
Query 325 TCTGAGGCTGATGCAAAAGCCCAGGAATACTCCACTAAGTTTTCCCAAGTTGAACAGAAA 384
|||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||
Sbjct 588 TCTGAGGCTGATGCTAAATCCCAAGAATACTCCTCTAAGTTTTCCCAAGTTGAACAGAAA 647
Query 385 CTGGACCAGGAAATCAAAGAGCGAGACGAGAAATACGCCGACCTGGACGCCAAATTCACT 444
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 648 CTGGACCAGGAAATCAAAGAGCGCGACGAGAAATATGCCGACCTGGACGCCAAATTCACC 707
Query 445 AGGCTTCACAAAAGGGCTAAACAGCGCATTCAAGAAATCCAAAAGGAAAAAGATGATCTC 504
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 708 AGGCTTCACAAAAGGGCTAAACAACGCATTCAAGAAATCCAAAAGGAAAAAGATGATCTC 767
Query 505 GACGCCCGTTTCCGGGAAGTGAATGAAACAGCTGAACGAGCATCTTCTCAGCACTCATCC 564
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 768 GACGCCCGTTTCCGGGAAGTGAATGAAACAGCTGAACGAGCATCTTCTCAACACTCATCC 827
Query 565 ATGCAACAAGAGCTGGAACGCACTAGGCAACAGGCGAATGAAGCACTGAAAGCTATGGAT 624
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 828 ATGCAACAAGAGCTGGAACGCACTAGGCAACAGGCGAATGAAGCACTTAAAGCAATGGAT 887
Query 625 GCAGAGAGGCAACAACTAAGGAGTGCCAATAACAAG 660
|| |||||||||||||||||||||||||||||||||
Sbjct 888 GCGGAGAGGCAACAACTAAGGAGTGCCAATAACAAG 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5