BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359633

Length=1335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55100.2 | Symbols:  | SWAP (Suppressor-of-White-APricot)/su...  1471    0.0  
  AT2G07706.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  73.1    6e-12


> AT5G55100.2 | Symbols:  | SWAP (Suppressor-of-White-APricot)/surp 
domain-containing protein | chr5:22361159-22364780 REVERSE 
LENGTH=2893
Length=2893

 Score = 1471 bits (796),  Expect = 0.0
 Identities = 928/989 (94%), Gaps = 20/989 (2%)
 Strand=Plus/Plus

Query  2     GTCAATCGCTCTCTGGCTCGACTGCTCCTAGTGAAGCTGATTCATCTGAAGCAGGCTTGT  61
             ||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  1663  GTCAATCACTCTCTGGCTCGACTGCTGCTAGTGAAGCTGATTCTTCTGAAGCAGGCTTGT  1722

Query  62    CTAAGGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTTTGTGGCCAAGT  121
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1723  CTAAAGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTTTGTGGCCAAGT  1782

Query  122   TAAAACCTGATGCGCACCCTGTGCAACAAGCTGAACCGTCGCGAAGCATATCAGTTGAAC  181
             |||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||
Sbjct  1783  TAAAACCTGATGCGCAGCCAGTTCAACAAGCTGAACCGTCGCGAAGCATATCAGTCGAAC  1842

Query  182   CGTTGGACTCTGGGATTTCTGGATTAGGTGCTAATGCTGCCAAAGAAAGAGACAGTAGCT  241
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1843  CGTTGGACTCTGGGATTTCTGGATTAGGTGCTAAGGCTGCCAAAGAAAGAGACAGTAGCT  1902

Query  242   CGATTCCATCTGTAGCTGAGACAAAACTAGCAGATGATGGTAACAGTGAAAGACGACCAA  301
             ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct  1903  CGATTCCATATGTAGCTGAGTCAAAACTAGCGGATGATGGTAACAGTGAAAGACGATCAA  1962

Query  302   AGAGGAATTACCGTTCGAGATCACATagagatgaagatgttaagatggaacaagaagaag  361
             ||||||||||||||||||||||||| ||||||||||||| |||||||||||      |||
Sbjct  1963  AGAGGAATTACCGTTCGAGATCACAGAGAGATGAAGATGGTAAGATGGAAC------AAG  2016

Query  362   gagaagaggaagagagcagcatggatgaagtgacagaagaaACCAAGACTGATAAGAAGC  421
             ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  2017  GAGAAGAGGAAGAGAGCAGCATGGACGAAGTTACAGAAGAAACCAAGACTGATAAGAAGC  2076

Query  422   ATTCATCTAGTAGAAAACGGCATATTAGGCATAAACATAAGACACGATACTCTTCCAAGG  481
             |||||| ||||||||||   |      |||||||||||||||||||||||||||||||||
Sbjct  2077  ATTCATGTAGTAGAAAA---C------GGCATAAACATAAGACACGATACTCTTCCAAGG  2127

Query  482   ACAGACATTCTCGGGACAAGCACAAGCATGCGAGCTCCTCGGATGATGAGTATCACAGCC  541
             |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct  2128  ACAGACATTCTCGGGACAAGCACAAGCATGAGAGCTCCTCAGATGATGAGTATCACAGTC  2187

Query  542   GTTCGCGTCATAGACACAGATACAGCAAATCTTCAGATAGGCATGAGCTATATGATTCTT  601
             |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct  2188  GTTCGCGTCATAGACACAGACACAGCAAATCTTCAGATAGGCATGAGCTTTATGATTCTT  2247

Query  602   CTGATAACGAGGGTGAGCACCGACACAGATCTAGTAAGCATAGCAAAGACGTTGATTATT  661
             ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  2248  CTGATAATGAGGGTGAGCACCGACACAGATCCAGTAAGCATAGCAAAGACGTTGATTATT  2307

Query  662   CTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGATAAA-CATCGTGATTCA  720
             ||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct  2308  CTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGA-AAAGCACCGTGATTCA  2366

Query  721   TCTGATGATGAACATCATCATTACAACCGACACAGATCCAGTAGGCGCAAACACGAGGAC  780
             ||||||||||||||||||||   || |||||||||||||||||| ||||| |||||||||
Sbjct  2367  TCTGATGATGAACATCATCAC--CA-CCGACACAGATCCAGTAGACGCAAGCACGAGGAC  2423

Query  781   TCTTCAGAAGATGAGCATGGTCATCGACACAAGTCTAGTAAACGTATAAAGAAAGATGAG  840
             |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  2424  TCTTCAGACGTTGAGCATGGTCATCGTCACAAGTCTAGTAAACGTATAAAGAAAGATGAG  2483

Query  841   AAAACAGTGGAAGAGGAGGCTGTTTCAAAGTCAGATCAGTCTGATCTTAAAGCTTCTCCT  900
             |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  2484  AAAACAGTGGAAGAGGAGACTGTTTCAAAGTCAGATCAGTCTGATCTTAAAGCATCTCCT  2543

Query  901   GAAGATAACATCCAGTACCCGCGAAACGAACCAACTCAAGTTTCGGATGAGCTAAGAGCC  960
             | ||||||||||| ||| | || ||| |||||| ||||||||||||||||||||||||||
Sbjct  2544  GGAGATAACATCCCGTATCTGCAAAATGAACCATCTCAAGTTTCGGATGAGCTAAGAGCC  2603

Query  961   AAAATCCGTGCCATGTTAGCTGATACCTT  989
             |||||||||||||||||||||||||||||
Sbjct  2604  AAAATCCGTGCCATGTTAGCTGATACCTT  2632


> AT2G07706.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:ATMG00470.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr2:3381901-3386102 REVERSE LENGTH=2080
Length=2080

 Score = 73.1 bits (39),  Expect = 6e-12
 Identities = 39/39 (100%), Gaps = 0/39 (0%)
 Strand=Plus/Plus

Query  1274  CAGTTGTTCGAGCAAGCAAATGGCTAGCAGGGCCGAGGA  1312
             |||||||||||||||||||||||||||||||||||||||
Sbjct  1468  CAGTTGTTCGAGCAAGCAAATGGCTAGCAGGGCCGAGGA  1506



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65712513405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5