BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359646

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27900.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein o...   789    0.0  


> AT2G27900.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein 
of unknown function DUF2451, C-terminal (InterPro:IPR019514), 
Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); 
Has 316 Blast hits to 252 proteins in 92 species: 
Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants 
- 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 
| chr2:11877430-11885491 FORWARD LENGTH=3852
Length=3852

 Score =  789 bits (427),  Expect = 0.0
 Identities = 477/501 (95%), Gaps = 4/501 (1%)
 Strand=Plus/Plus

Query  111  AGGCACGGGGGGCATGGATTTATCGAAGGTTGGTGAAAAATTCCTCCA-CTCTGTTAAAT  169
            |||||| || | |||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct  371  AGGCACTGGTGTCATGGATTTATCTAAAGTTGGTGAAAAATTCCT-CAGCTCTGTTAAAT  429

Query  170  CCGCTACTTTTCTTGGTCTCTTACCATCACCATCGATCTCGGATCGTCCTGAGATTCCGG  229
            ||||||||| ||||||||||||||| || || || ||||| ||||||||||||||||| |
Sbjct  430  CCGCTACTTCTCTTGGTCTCTTACCTTCTCCTTCTATCTCCGATCGTCCTGAGATTCCAG  489

Query  230  CACGTGCTGCGGCAGCTGCTGCGGTTGCTCGTGCTTTGGCGGGACTTCCTTCTGATCAGA  289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  490  CACGTGCTGCGGCAGCTGCTGCGGTTGCTCGTGCTTTGGCGGGACTTCCTTCTGATCAGA  549

Query  290  GGTTGAGTATATCTTCTACTGCTACTGAGCTTAACTCAATTTATGGAAATAGACCTCTTC  349
            | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  550  GATTGAGTATATCTTCTACTGCTACTGAGCTTAACTCAATTTATGGAAACAGACCTCTTC  609

Query  350  CTCAACAAGTTGAAGAGCTTGAAGAGGGATTT-TATGAAGAGGATTTTGATCCGGTAAGG  408
            ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct  610  CTCAACAAGTTGAAGAGCTTGAAGAAGG-TTTCTATGAAGAGGATTTTGATCCGGTAAGG  668

Query  409  CATATTTTGGAGAATGTGCCGGATGATGAAAGTGAGTTAGCTTATTTTGAGAAGCAGGCT  468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  669  CATATTTTGGAGAATGTGCCGGATGATGAAAGTGAGTTAGCTTATTTTGAGAAGCAGGCT  728

Query  469  ACCTTGAGGTTGGTACAGCTGGATAGAGTGGCGGAAAATCTGTCACACCATGTTATGGAG  528
            ||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||||
Sbjct  729  ACCTTGAGGTTGGTACAGCTGGATAAAGTGGCAGAAACTCTGTCTCACCATGTTATGGAG  788

Query  529  CATCATGAAGTAATGGTGAAGGGGATGAATTTGGTAAGAGAATTGGAAAAAGATTTGAAG  588
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  789  CATCATGAAGTAATGGTGAAGGGGATGAATTTGGTAAGAGAATTGGAGAAAGATTTGAAG  848

Query  589  ATTGCAAATGTCATCTGCAAG  609
            |||||||||||||||||||||
Sbjct  849  ATTGCAAATGTCATCTGCAAG  869


 Score =  158 bits (85),  Expect = 8e-38
 Identities = 106/115 (92%), Gaps = 6/115 (5%)
 Strand=Plus/Plus

Query  1    ATGCAGCC-AA-ATC-TCTTCCCATTCGGTTCAGTTTTGGGTAATCCATTTCTCTTCAAT  57
            |||||||| ||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  225  ATGCAGCCTAATCTCTTCTTCCCATTCGGTTCAGTTTTGGGTAATCCATTTCTCTTCAAT  284

Query  58   GGCGGTGGAGATCTAAACGAACTTGGTTCTGGTGCTGGGATTC-A-AGCTCTAGG  110
            |||||||||||||||||||||||||||||||||||||   ||| | |||||||||
Sbjct  285  GGCGGTGGAGATCTAAACGAACTTGGTTCTGGTGCTGCT-TTCGAGAGCTCTAGG  338



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5