BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359673
Length=2591
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21480.1 | Symbols: | BRCT domain-containing DNA repair pro... 4145 0.0
> AT3G21480.1 | Symbols: | BRCT domain-containing DNA repair protein
| chr3:7567730-7572161 FORWARD LENGTH=3297
Length=3297
Score = 4145 bits (2244), Expect = 0.0
Identities = 2488/2605 (96%), Gaps = 20/2605 (1%)
Strand=Plus/Plus
Query 3 AAAAAGGTGGCTAGGTTCGCTTCAGTTCGTTCATCAGCTTTTCGTGCTTCTGCTGTGGCA 62
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 526 AAAAAGGTGGCTAGGTTCGCTTCAGTTCGTTCAGCAGCTTTTCGTGCTTCTGCTGTGGCA 585
Query 63 GCTCGTGCGGCAAA-C------C--CCAACACTGACTGTTCTACTCTAATCAACTGTCAT 113
||||||| ||||| | | ||||||||||||||||||| |||||||||||||||
Sbjct 586 GCTCGTGTTGCAAACCAAAAATCTGCCAACACTGACTGTTCTACACTAATCAACTGTCAT 645
Query 114 TCTTCTGGGAAAGGAGCCACACATAATTCTAGTCTAGAAAATAGTGTTGGAGAAGTAGGG 173
||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 646 TCTTCTGGGAAAGGAACCACACATAATTCTGGTCTAGAAAATAGTGTTGGGGAAGTAGGG 705
Query 174 AATCAGCAATCTCTTACCAGTATATTTGTTGAAGAGAAAAATGACTTAAGAACAGCAAAC 233
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||
Sbjct 706 AATCAGCAATCTCTTACCAGTTTATTTGTTGAAGAGAAAAAGGACTTAAGAACAGGAAAA 765
Query 234 AAAACAGCGAGGAAGCTTTTCATTGAGGATTTGCCTGAAG-AAAATTGTCATTCTACTGA 292
||||||||||||||||||||| | |||||||| ||||||| |||||| ||||||||||||
Sbjct 766 AAAACAGCGAGGAAGCTTTTCGTAGAGGATTTCCCTGAAGAAAAATT-TCATTCTACTGA 824
Query 293 TGGCAATGTCGATCTGGGGAATTTGAGTTATATTGACTCTCAAGAACCTGGCGAGGCATC 352
| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 825 TTGCAATGTCGATCTGGGGAATTTGAGTTATATTGGCTCTCAAGAACCTGGTGAGGAATC 884
Query 353 CCAGGCCAGTGCTCTTAACTTGGTTGATAAGCTCATTAGTGAGTGCCGTCTAGAGTTTGA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CCAGGCCAGTGCTCTTAACTTGGTTGATAAGCTCATTAGTGAGTGCCGTCTAGAGTTTGA 944
Query 413 TTTTGAAGTTGAAGCTGACTATGGAAGGAAAACAGAAGAAAAATCAAAATTTGTTCAGAT 472
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 945 TTTTGAAGTTCAAGCTGACTATGGAAGGAAAACAGAAGATAAATCAAAATTTGTTCAGAT 1004
Query 473 TTTTAAAGGTCCACAAGAATTAGCAAAGAAAGTAAGTTACAAAAGCGGAGCTGTTGGAAA 532
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1005 TTTTAAAGGTCCACAAGAATTAGCAAAGAAGGTAAGTTACAAAAGTGGAGCTGTTGGAAA 1064
Query 533 CGATATTTTCGACTGGGATGATAATCGTGAGGATGAAGGAGGGGGTGATATCTATCGTAG 592
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 CAATATTTTCGACTGGGATGATAATCGTGAGGATGAAGGAGGGGGTGATATCTATCGTAG 1124
Query 593 AAGAAAAGATGAATTCTTTGGCGTTGCAAGTAAAAGACGGGAATTTTCTAGCTTGCCTAG 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AAGAAAAGATGAATTCTTTGGCGTTGCAAGTAAAAGACGGGAATTTTCTAGCTTGCCTAG 1184
Query 653 AGAACAGAAAAGAGAACTGATACCAGTTGCTGTGGATAAAAGAAGGGCT--T-CTGATTC 709
|||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||||
Sbjct 1185 AGAACAGAAAAGAGAACTGATACCAGTTGCAGTGGATAAAAGATGGGCTCGTTCTGATTC 1244
Query 710 CAAACTGTTGCAGCATAGTGTGACTAGGAGCCGAAAAAATATCCAGGGTGCTAAAAAGAA 769
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1245 CAAACTGTTGAAGCATAGTGTGACTAGGAGCCGAAAGAATATCCAGGGTGCTAAAAAGAA 1304
Query 770 TCTTGGCAAAGAGTTAGATGAAGTTCGTGAAGCGGTAGTTTTAGGGAATTATACACAAGT 829
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1305 TCTTGGCAAAGAGTTAGATGAAGTTCGTGAAGCGGCAGTTTTAGGGAATGATACACAAGT 1364
Query 830 GGCTGCTGAAGCGATTGATGATCTGTCCTCTGGAG-CCTGTGGCAAGTTTGATGCTGAGG 888
|||||||||||||||||||||||||| |||||||| || ||||||| ||||||| |||||
Sbjct 1365 GGCTGCTGAAGCGATTGATGATCTGTGCTCTGGAGACC-GTGGCAAATTTGATGGTGAGG 1423
Query 889 CGAGTTGTCTTACAGGAAAGAAACTGTCACCAGGAGAAGAGAGAGGATTTTCTCCCGGTG 948
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1424 CGAGTTGTCTTACAGGAAAGAAACTGTCACCAGAAGAAGAGAGAGGATTTTCTCCCGGTG 1483
Query 949 GAGTCGTTACTAGACAATCCAAGGGAACTAAGAGGATTCAGGCTATGAGTAAAGATGAAT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GAGTCGTTACTAGACAATCCAAGGGAACTAAGAGGATTCAGGCTATGAGTAAAGATGAAT 1543
Query 1009 TGTTGaaaaaaaGAATGAAGAAGGCTAGTCCAAGTCCTGCTAAAGCTTGCCGGAGGAATA 1068
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1544 TGTTGAAAAAAAGAATGAAGAAGGCTAGTCCTAGTCCTGCTAAAGCTTGCCGGACGAATA 1603
Query 1069 TTGAAGGGTCTTTAAAGGGTGACCAGCTTGATAAAGAAGGTCCATGCTTCTGGAAGAGTA 1128
| ||||| |||| ||| |||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1604 TCGAAGGATCTTCAAATGGTGACCAGCTTAATAAAGAAGGTCCATGCTGCTGGAAGAGTA 1663
Query 1129 GGAAGGTCCAGACTGCTTCACaaaaaactaaaaaGAATCTTGTTGACGAGTTGGATGAAG 1188
||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 1664 GGAAGGTCCAGACTGCTTCACGAGAAACTAAAAAGAATCTTGTTGACGAGTTTGATGAAG 1723
Query 1189 TTTCTAAGGAAAGCAATACAGAAATTTTTGATAGGCATGAAGAAGCAGAAGCAGGCCCTG 1248
||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1724 TTTCTCAGGAAAGTAATACAGAAATGTTTGATAGGCATGAAGAAGCAGAAGCAGGCCCTG 1783
Query 1249 ATACACAAATGGCTGCTGAAGTGATGAATGCTCTGCACTCTGGGGACGGCAGGGAAATTG 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 ATACACAAATGGCTGCTGAAGTGATGAATGCTCTGCACTCTGGGGACGGCAGGGAAATTG 1843
Query 1309 ATCCTGAGCCAAATAATCTAATAGGTAAGAAATTGTCACCGGAAGGAGGCATTTCTAGTT 1368
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 1844 ATCCTGAGCCAAATAATCTAATAGGTAAGAAATTGTTATTGGAAGGAGGCATTTCTAGGT 1903
Query 1369 GTGGAGTCGTTACCAGAAAATCCAAAAGGATCAAGGGGATTCAGGCTGTGGATAGTGATG 1428
||||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||
Sbjct 1904 GTGGAGTCGTTACCAGAAAGTCCAAGAGGATCAAGGGGATTCAGGCTGTGGACAATGATG 1963
Query 1429 TTGAATCATTGAAAC-AAAAAACCAAGAAGGCTAGATCAATTCTTGGTAAGTCTTCTGAG 1487
||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||
Sbjct 1964 TTGAATCATTGAAACCAAAAAAC-AAGAAGGCTAGATCAATTCTTGCTAAGTCTTTTGAG 2022
Query 1488 AAGAATATGGATAGGTATTCGAAAAATGACAAAGTTGATATGCCAGATGAAGCTGTTGTG 1547
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 2023 AAGAATATGGATAGGTATTCAAAAAATGACAAAGTTGATACGCCAGATGAAGCTGTTGCG 2082
Query 1548 TCAACTACAGAGAAGAGGCAAGGAGAATTATCAAACAAACATTGTATGTCTAAGTTACTT 1607
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 TCAACCACAGAAAAGAGGCAAGGAGAATTATCAAACAAACATTGTATGTCTAAGTTACTT 2142
Query 1608 AAGAAATCA-AGTAGAGGTGAAGCTGAGGTGTTGAATTATCCCAAGCGGAGAAGATCAGC 1666
||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 AAGCAATCACA-TAGAGGTGAAGCTGAGGTGTTGAATTATCCCAAGCGGAGAAGATCAGC 2201
Query 1667 TCGTATTTCACAAGATCAGGTTAATGAGGCAGGGAGGAGTTCAGACCCCGCGTTTGATAC 1726
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2202 TCGTATTTCACAAGATCAGGTTAATGAGGCTGGGAGGAGTTCAGATCCCGCGTTTGATAC 2261
Query 1727 TCCAGTTAAGTCTAAGACACCGTCAACGAATGTATCGCCTATATGCATGGGTGGTGAGTA 1786
||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |||||
Sbjct 2262 TCCAGCTAAGTCTAAGACGCCGTCAACAAATGTATCGCCTATATGCATGGGTGACGAGTA 2321
Query 1787 TCATAGACTTTCTTGCAAGGATTCATTTACATCACACACTACAAGGGAATTTCGTAGCTT 1846
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2322 TCATAGACTTTCTTGCAAAGATTCATTTACATCACACACTACAAGGGAATTTCGTAGCTT 2381
Query 1847 AACCTTACCATTAGCGGAACCTATCTCCAAGACAAAGAGTACTAGAAAGAGAAGAGATTT 1906
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2382 AACCGTACCAGTAGCGGAACCTATCTCCGAGACAAAGAGTACTAGAAAGAGAAGAGATTT 2441
Query 1907 GGGTAGTATACGTGTCCTGTTCAGCCAGCATCTTGATGAAGATGTGACCAAGCATCAGAA 1966
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2442 GGGTAGTATATGTGTCTTGTTCAGCCAGCATCTTGATGAAGATGTGACCAAGCATCAGAA 2501
Query 1967 GAAGATTTTGGCAAGGTTTGATATCTCGGAAGCTTCCTCCATGAAGGAGGCAACACACTT 2026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 GAAGATTTTGGCAAGGTTTGATATCTCGGAAGCTTCCTCCATGAAGGAGGCAACACACTT 2561
Query 2027 CTTAGCTGATAACTTTACGCGCACAAGGAACATGCTAGAGGCAATCGCTTCAGGCAAGCC 2086
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2562 CATAGCTGATAACTTTACGCGCACAAGGAACATGCTAGAGGCAATCGCTTCAGGCAAGCC 2621
Query 2087 AGTGGTCACAACACAATGGCTTGAAAGCATCGATCAAGTAAGCATATACGTTGACGAGGA 2146
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 2622 AGTGGTCACAACACAATGGCTTGAAAGCATCGATCAAGTAAACATATACGTTGATGAGGA 2681
Query 2147 TATGTATATACTCAGAGATTCAAAAAAGGAGAAGGAGTTCTGTTTCAACATGGGGGTTTC 2206
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2682 TATGTATATACTCAGAGATTCAAAGAAGGAGAAGGAGTTCTGTTTCAACATGGGGGTTTC 2741
Query 2207 TTTGGCTCGTGCACGCCAGTTTCCGCTACTACAGGGGAGAAGAGTTTTTATCACCCCAAA 2266
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2742 TTTGGCTCGTGCACGCCAGTTTCCGCTACTACAGGGAAGAAGAGTTTTTATCACTCCAAA 2801
Query 2267 TACAAAGCCTGGTTTAAACACAATCACGACTTTGGTTAAGGCTGTTCATGGACTGCCTGT 2326
||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 2802 TACAAAGCCTGCTTTAAACACAATCACTACTTTGGTTAAAGCAGTTCATGGACTGCCTGT 2861
Query 2327 AGAAAGACTCGGAAGATCTGCCCTAAGTGAAGATAAGGTCCCAGAGAATCTTCTGGTCTT 2386
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2862 AGAAAGACTCGGAAGATCTTCCCTAAGCGAAGATAAGGTCCCAGAGAATCTTCTGGTCTT 2921
Query 2387 ATCATGTGAAGAGGATCGCGCTACCTGCATACCGTTTCTAGAAAGAGGGGCCGAGGTATA 2446
||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||
Sbjct 2922 ATCATGTGAAGAGGATCGCGCTATCTGTATACCCTTTCTGGAAAGAGGGGCCGAGGTATA 2981
Query 2447 TAGCTCGGAGTTACTACTGAATGGGATAGTTACTCAAAGGCTTGAGTATGAGAGGTACCG 2506
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2982 TAGCTCGGAGTTACTACTAAATGGGATAGTTACCCAAAGGCTTGAGTATGAGAGGTACCG 3041
Query 2507 TCTCTTCACAGACCATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGCAAAGG 2566
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3042 TCTCTTCACAGACCATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGGAAAGG 3101
Query 2567 TAAGTTTCAACGCCGTAGCGGGTAA 2591
|||||| ||||| ||||||||||||
Sbjct 3102 TAAGTTCCAACGTCGTAGCGGGTAA 3126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128628041852
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5