BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359679
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 363 3e-99
> AT5G50115.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Molecular
chaperone Hsp40/DnaJ family protein (TAIR:AT5G50510.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:20379489-20381036 FORWARD LENGTH=1458
Length=1458
Score = 363 bits (196), Expect = 3e-99
Identities = 303/353 (86%), Gaps = 14/353 (4%)
Strand=Plus/Plus
Query 730 TGGGCTCTTTATGAAAATTGGTCACCATCTTGGGATTTTTCAACTTCAGTAGAAGAAATG 789
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1069 TGGGCTCTTTATGCAAATTGGTCACCATCTTGGGATATTTCAACTTCAGTAGAAGAAATG 1128
Query 790 AACAAGTATGAAATGGTAGAAGTTCTTCAAGATTTC-AGTGAAGATGGAGGTGTGACGGT 848
||||||||||| ||||||||||| |||||||||||| | |||||| |||||||||| ||
Sbjct 1129 AACAAGTATGATATGGTAGAAGTGCTTCAAGATTTCGA-TGAAGAAAGAGGTGTGACAGT 1187
Query 849 TGTGCCATTAGTTCAAGTCCCAAGATTCATAACTGTGTTTCGTCGCA-TTCCAAAACATA 907
||| || ||||| |||||||| |||||| |||||||||||||||| ||| || | |
Sbjct 1188 TGTACCGCTAGTTAAAGTCCCAGGATTCAAAACTGTGTTTCGTCGCCGTTCGAATCCG-A 1246
Query 908 GGACATTCCCAAGGAACGAACTGTTCAGGTTCTCGCATCAGGT-GCCTTCTCATTTTCTT 966
|||||| ||||||||| ||||||||||||||||||||||| || || || ||| || |||
Sbjct 1247 GGACATACCCAAGGAAAGAACTGTTCAGGTTCTCGCATCAAGTTGC-TTATCAATTACTT 1305
Query 967 ACAAGTCAAGA-TGGTGAGAATGCTCCTGA-AGGTTGCTTGGAGCTTGATCCAGCAGCTT 1024
|||||| || | || | ||||||||||| | || |||||||||||||||||||||| |||
Sbjct 1306 ACAAGTAAAAAATG-TAAGAATGCTCCT-ACAGATTGCTTGGAGCTTGATCCAGCATCTT 1363
Query 1025 TGCCACAAGAGCTGCTCAA-GATTGTCACTAAGGAGGAGATGAAAGAATCGGA 1076
|| |||| ||||| ||||| | || ||||| ||||||| ||| ||||| |||
Sbjct 1364 TGACACATGAGCTTCTCAAAG-TTCTCACTGAGGAGGA--TGAGAGAATTGGA 1413
Score = 361 bits (195), Expect = 1e-98
Identities = 309/362 (85%), Gaps = 15/362 (4%)
Strand=Plus/Plus
Query 272 CTCAAGACTCGAAGAA-AAGCAATGCAGCCAAAAGAGTAAAG--T-GCGAAAGCAAGAAC 327
||| |||||| ||||| | | ||||||| |||||||||||| | |||| |||||||
Sbjct 698 CTCTAGACTCAAAGAAGTA-CGATGCAGCGAAAAGAGTAAAGATTAATGAAACCAAGAAC 756
Query 328 ACTAAC-GATGTGAT-TATGGAGGAGGAATATGATGTAATGGCT-ATGAGTGTTCCAGAT 384
||| || || || | || ||||| || ||| |||| ||| | |||||||| || |||
Sbjct 757 ACT-ACTCATATGGTGAAT-GAGGATGAGTATAATGTGGTGG-TAATGAGTGTGCCGGAT 813
Query 385 GCTGATTTCTACAACTTCGAAAAGGATCGG-GTCGAAGCTTC-TTTCGGAGAAAACCAAG 442
||||||| |||||||||||| ||||||||| || |||||| ||| ||||||||||| |
Sbjct 814 GCTGATTACTACAACTTCGACAAGGATCGGACTC-TAGCTTCGTTT-GGAGAAAACCAGG 871
Query 443 TATGGGCTGCTTATGATGATTACGGAATGCCTCAGTGGTATGCATTGGTCCATAAGGTTG 502
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 872 TATGGGCTGCTTACGATGATTACGGAATGCCTCGGTGGTATGCATTGGTCCATAAGATTG 931
Query 503 TTTCTCAAGAACCGTTCAAGACGTGTATTTCTTGGCTTGATGGAAAGAAAAATGGATATG 562
| ||||||||||||||| || ||||||||||||||||||||| ||||| || ||||||
Sbjct 932 TCTCTCAAGAACCGTTCGAGTTGTGTATTTCTTGGCTTGATGGCAAGAATAAGGGATATA 991
Query 563 TGGGTTCAATGAAGAAGTGGATTGATTCAGGGTATTACAAGACGAGTGGATGCTTCTCAA 622
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 992 CGGGTTCAATGAAGAAGTGGATTGATTCAGGGTATTACAAGACGAGTGGGTGCTTCACAA 1051
Query 623 TC 624
||
Sbjct 1052 TC 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5