BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359707
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 158 6e-38
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 84.2 1e-15
AT2G16450.1 | Symbols: | F-box and associated interaction doma... 67.6 1e-10
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 158 bits (85), Expect = 6e-38
Identities = 344/460 (75%), Gaps = 53/460 (12%)
Strand=Plus/Plus
Query 16 AGAAGCTTTTTAGGGTTTGATCCGATTGAGAAGCAGTTCAAGGTGTTGTTCATGATGGGT 75
||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| |
Sbjct 460 AGAAGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCGCATGAAATAT 519
Query 76 ATTGTTGGTAGTGAGAGG-GTTAATCTTATTATGACATTAGGAAC-TGG-AAAGTTAAGG 132
| || | || || | | ||| | | |||| ||||||||| ||| ||| ||| | | ||
Sbjct 520 AATGATCGTGGT-ATTGTTGTTCACCATATTCTGACATTAG-AACCTGGCAAAATGA-GG 576
Query 133 TGGAGGAATATCCAATGTCCTTTTA-CCCTT-AATCCCTTTCGGTTGTGTGAAGGGATAT 190
||||| || |||| |||||| || | ||| | || || |||| | | | |||| |||||
Sbjct 577 TGGAGAAAAATCCGATGTCCCTT-AGCCCATGAA-CC-TTTC--T-G-G-GAAGAGATAT 628
Query 191 GTATCAATGGGGTTTTGTATTACTTAGCTAAAC-ATATTGATGAACGAAATCAGAAATGT 249
| ||||||||||||||||||||||||| ||| | | ||||| | | || | |
Sbjct 629 GCGCCAATGGGGTTTTGTATTACTTAGCTGAACCA-ACTGATGGAGGG--TC-----T-T 679
Query 250 TATGTGATA-GTTTGCTTTGATGTTAGGTATGAGAAAT-CTAAGTTCCTAGACTCAGTCT 307
|||||||| ||| ||||||||||| ||| |||||||| | || || | ||| || |
Sbjct 680 -ATGTGATATGTT-GCTTTGATGTTCGGTCTGAGAAATTCAAATTTATT-GACGCAAAAT 736
Query 308 GCTT-G-T--TTG----AT-CAATTGATAAACTATAAGGGGAAATTAGGTGG-ATTTTAT 357
|||| | | || || |||||||| || |||||||| ||| ||||||| ||| |
Sbjct 737 GCTTTGGTGATTTCTCTATTCAATTGATCAATTATAAGGGTAAACTAGGTGGGATT--AG 794
Query 358 TTG-AACTATGCTTCTAGT-GATGGATTTCC--CC-TTAAGTTG-ACTATGTGGATTCTA 411
||| || |||| | | || |||||| | || || ||||| | ||||||| |||||
Sbjct 795 TTGGAAGTATGATACC-GTCGATGGAAAGCGTACCGTTGAGTTGTA-TATGTGGGTTCTA 852
Query 412 GAGGATGTCGAGAAACAAGAA-TGGTCCAAATATGTCTAC 450
||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 853 GAGGATGTCGAGAAACA-GAAATGGTCCAAATACGTCTAC 891
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 84.2 bits (45), Expect = 1e-15
Identities = 89/109 (82%), Gaps = 8/109 (7%)
Strand=Plus/Plus
Query 179 GTGAAGGGATATGTATCAATGGGGTTTTGTATTACTTAGCTAAACATATTGATGAACGA- 237
|||| |||||||| ||||||||||||||||||| ||||||| | | | |||| | |
Sbjct 593 GTGATGGGATATGCATCAATGGGGTTTTGTATTTCTTAGCT-GAGAGA--AATGAGCTAG 649
Query 238 AATCAGAAATGTTATGTGATAGTTTGCTTTGATGTTAGGTATGAGAAAT 286
| || | | ||||||||||||||||||||||||||||| ||||||||
Sbjct 650 AGTCTG--A--TTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAAT 694
> AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284
Score = 67.6 bits (36), Expect = 1e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 179 GTGAAGGGATATGTATCAATGGGGTTTTGTATTACTTAG 217
|||||||| ||||||||||||||||||||||||||||||
Sbjct 632 GTGAAGGGGTATGTATCAATGGGGTTTTGTATTACTTAG 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5