BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg359707 Length=501 Score E Sequences producing significant alignments: (Bits) Value AT1G33020.1 | Symbols: | F-box and associated interaction doma... 158 6e-38 AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 84.2 1e-15 AT2G16450.1 | Symbols: | F-box and associated interaction doma... 67.6 1e-10 > AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:11962746-11964832 FORWARD LENGTH=1647 Length=1647 Score = 158 bits (85), Expect = 6e-38 Identities = 344/460 (75%), Gaps = 53/460 (12%) Strand=Plus/Plus Query 16 AGAAGCTTTTTAGGGTTTGATCCGATTGAGAAGCAGTTCAAGGTGTTGTTCATGATGGGT 75 ||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||| | Sbjct 460 AGAAGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCGCATGAAATAT 519 Query 76 ATTGTTGGTAGTGAGAGG-GTTAATCTTATTATGACATTAGGAAC-TGG-AAAGTTAAGG 132 | || | || || | | ||| | | |||| ||||||||| ||| ||| ||| | | || Sbjct 520 AATGATCGTGGT-ATTGTTGTTCACCATATTCTGACATTAG-AACCTGGCAAAATGA-GG 576 Query 133 TGGAGGAATATCCAATGTCCTTTTA-CCCTT-AATCCCTTTCGGTTGTGTGAAGGGATAT 190 ||||| || |||| |||||| || | ||| | || || |||| | | | |||| ||||| Sbjct 577 TGGAGAAAAATCCGATGTCCCTT-AGCCCATGAA-CC-TTTC--T-G-G-GAAGAGATAT 628 Query 191 GTATCAATGGGGTTTTGTATTACTTAGCTAAAC-ATATTGATGAACGAAATCAGAAATGT 249 | ||||||||||||||||||||||||| ||| | | ||||| | | || | | Sbjct 629 GCGCCAATGGGGTTTTGTATTACTTAGCTGAACCA-ACTGATGGAGGG--TC-----T-T 679 Query 250 TATGTGATA-GTTTGCTTTGATGTTAGGTATGAGAAAT-CTAAGTTCCTAGACTCAGTCT 307 |||||||| ||| ||||||||||| ||| |||||||| | || || | ||| || | Sbjct 680 -ATGTGATATGTT-GCTTTGATGTTCGGTCTGAGAAATTCAAATTTATT-GACGCAAAAT 736 Query 308 GCTT-G-T--TTG----AT-CAATTGATAAACTATAAGGGGAAATTAGGTGG-ATTTTAT 357 |||| | | || || |||||||| || |||||||| ||| ||||||| ||| | Sbjct 737 GCTTTGGTGATTTCTCTATTCAATTGATCAATTATAAGGGTAAACTAGGTGGGATT--AG 794 Query 358 TTG-AACTATGCTTCTAGT-GATGGATTTCC--CC-TTAAGTTG-ACTATGTGGATTCTA 411 ||| || |||| | | || |||||| | || || ||||| | ||||||| ||||| Sbjct 795 TTGGAAGTATGATACC-GTCGATGGAAAGCGTACCGTTGAGTTGTA-TATGTGGGTTCTA 852 Query 412 GAGGATGTCGAGAAACAAGAA-TGGTCCAAATATGTCTAC 450 ||||||||||||||||| ||| ||||||||||| |||||| Sbjct 853 GAGGATGTCGAGAAACA-GAAATGGTCCAAATACGTCTAC 891 > AT2G02660.1 | Symbols: | F-box associated ubiquitination effector family protein | chr2:738504-739769 FORWARD LENGTH=1266 Length=1266 Score = 84.2 bits (45), Expect = 1e-15 Identities = 89/109 (82%), Gaps = 8/109 (7%) Strand=Plus/Plus Query 179 GTGAAGGGATATGTATCAATGGGGTTTTGTATTACTTAGCTAAACATATTGATGAACGA- 237 |||| |||||||| ||||||||||||||||||| ||||||| | | | |||| | | Sbjct 593 GTGATGGGATATGCATCAATGGGGTTTTGTATTTCTTAGCT-GAGAGA--AATGAGCTAG 649 Query 238 AATCAGAAATGTTATGTGATAGTTTGCTTTGATGTTAGGTATGAGAAAT 286 | || | | ||||||||||||||||||||||||||||| |||||||| Sbjct 650 AGTCTG--A--TTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAAT 694 > AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing protein | chr2:7131520-7132803 REVERSE LENGTH=1284 Length=1284 Score = 67.6 bits (36), Expect = 1e-10 Identities = 38/39 (97%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 179 GTGAAGGGATATGTATCAATGGGGTTTTGTATTACTTAG 217 |||||||| |||||||||||||||||||||||||||||| Sbjct 632 GTGAAGGGGTATGTATCAATGGGGTTTTGTATTACTTAG 670 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23911453972 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5