BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359723
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45610.1 | Symbols: SUV2 | protein dimerizations | chr5:1849... 917 0.0
> AT5G45610.1 | Symbols: SUV2 | protein dimerizations | chr5:18496311-18499673
REVERSE LENGTH=2027
Length=2027
Score = 917 bits (496), Expect = 0.0
Identities = 578/618 (94%), Gaps = 3/618 (0%)
Strand=Plus/Plus
Query 3 CCTAAACTATACGATAGATTTGATTCTCTCGCATGAGGAAAAGAACTCTTCAGATACTGA 62
|||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1324 CCTAAACTATACGATACATTTGATTCTCTC-CATGAGGAAAAGAACTCCTCTGATACTGA 1382
Query 63 AAACGATAGTGAAGTAAATCTCTTTGCTACAGAAGCATTTGGTAAGATCTTTGAAGGCTT 122
|||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1383 AAACGATAGTGAAGGAAATTTCTTTGCTTTGGAAGCATTTGGTAAGATCTTTGAAGGCTT 1442
Query 123 AGCAGATTGTTTGACTTCTCCCAGAAAGACATCAGAGGATCTGGAATTATGTCGGAATGT 182
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1443 AGCAGATTGTTTGACTTCTCCCAGAAAGACATCAGAGGATCTGGAACTGTGTAGGAATGT 1502
Query 183 AATAATGATCTTGGC-CTTAGCAGCTTCTTCAGGAAACTCTGGCTATGAACTGCTCTCAA 241
||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1503 AATAATGATCTTGGCTCT-AGCAGCTTCTTCAGGAAACTCTGGCTATGAACTACTCTCAA 1561
Query 242 ATCACAAACTACCTCAAGATACCAACTTTTTAATGGTGATACTTCATCTTTTAGTTGCAG 301
|||||| ||||||||||| | || ||| |||||| |||||||||||||||||||||| |
Sbjct 1562 GTCACAAGCTACCTCAAGACAGCAGCTTCTTAATGCTGATACTTCATCTTTTAGTTGCTG 1621
Query 302 AAATAGACTCGGAATCAACAGAGTTTCGTCCAAAAGCGGAAATCTTGAAAGCGAGGACAT 361
|||||||||||||||||||||| |||| |||||||||||||||||| ||||| || |||
Sbjct 1622 AAATAGACTCGGAATCAACAGAATTTCATCCAAAAGCGGAAATCTTCAAAGCAAGAACAC 1681
Query 362 TATTGATGAGAGAGATACTGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTG 421
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TATTGATGAGAGAGATATTGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTG 1741
Query 422 CTACTATTCTAAAAGAACTAACAAAGAGCAGAGACATGGCGAGTCTAACAGTTGATGCAG 481
||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1742 CTACTATTCTAAAGGAACTAACAACGAGCAGAGACATGGCGAGTCTAACGGTTGATGCAG 1801
Query 482 CCACAAGATTATCCCGTAAAAGAAACTTACTAGGACAACCTGAAAACAGTGTTCAGAGAA 541
||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||
Sbjct 1802 CCACAAGATTATCCCGTAAAAGAAACTTACTTGGAAAACCTGAAAGCAGTGTTGAGAGAA 1861
Query 542 TGAGGAATACAGAAATCATGGATTTAGCCCGCATTTTCAAGAGACGGGTTTTCGCCTTCT 601
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1862 TGAGGAATACCGAAATCATGGATTTAGCCCGCATTTTCAAGAAACGGGTTTTCGCCTTCT 1921
Query 602 TAGGCGACAATACTATAT 619
|||| |||||||||||||
Sbjct 1922 TAGGTGACAATACTATAT 1939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5