BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg359723 Length=621 Score E Sequences producing significant alignments: (Bits) Value AT5G45610.1 | Symbols: SUV2 | protein dimerizations | chr5:1849... 917 0.0 > AT5G45610.1 | Symbols: SUV2 | protein dimerizations | chr5:18496311-18499673 REVERSE LENGTH=2027 Length=2027 Score = 917 bits (496), Expect = 0.0 Identities = 578/618 (94%), Gaps = 3/618 (0%) Strand=Plus/Plus Query 3 CCTAAACTATACGATAGATTTGATTCTCTCGCATGAGGAAAAGAACTCTTCAGATACTGA 62 |||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||| Sbjct 1324 CCTAAACTATACGATACATTTGATTCTCTC-CATGAGGAAAAGAACTCCTCTGATACTGA 1382 Query 63 AAACGATAGTGAAGTAAATCTCTTTGCTACAGAAGCATTTGGTAAGATCTTTGAAGGCTT 122 |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1383 AAACGATAGTGAAGGAAATTTCTTTGCTTTGGAAGCATTTGGTAAGATCTTTGAAGGCTT 1442 Query 123 AGCAGATTGTTTGACTTCTCCCAGAAAGACATCAGAGGATCTGGAATTATGTCGGAATGT 182 |||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| Sbjct 1443 AGCAGATTGTTTGACTTCTCCCAGAAAGACATCAGAGGATCTGGAACTGTGTAGGAATGT 1502 Query 183 AATAATGATCTTGGC-CTTAGCAGCTTCTTCAGGAAACTCTGGCTATGAACTGCTCTCAA 241 ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1503 AATAATGATCTTGGCTCT-AGCAGCTTCTTCAGGAAACTCTGGCTATGAACTACTCTCAA 1561 Query 242 ATCACAAACTACCTCAAGATACCAACTTTTTAATGGTGATACTTCATCTTTTAGTTGCAG 301 |||||| ||||||||||| | || ||| |||||| |||||||||||||||||||||| | Sbjct 1562 GTCACAAGCTACCTCAAGACAGCAGCTTCTTAATGCTGATACTTCATCTTTTAGTTGCTG 1621 Query 302 AAATAGACTCGGAATCAACAGAGTTTCGTCCAAAAGCGGAAATCTTGAAAGCGAGGACAT 361 |||||||||||||||||||||| |||| |||||||||||||||||| ||||| || ||| Sbjct 1622 AAATAGACTCGGAATCAACAGAATTTCATCCAAAAGCGGAAATCTTCAAAGCAAGAACAC 1681 Query 362 TATTGATGAGAGAGATACTGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTG 421 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1682 TATTGATGAGAGAGATATTGATATTACTAAACAGACTTGTCTCTGGCTTGTCAAGCTCTG 1741 Query 422 CTACTATTCTAAAAGAACTAACAAAGAGCAGAGACATGGCGAGTCTAACAGTTGATGCAG 481 ||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1742 CTACTATTCTAAAGGAACTAACAACGAGCAGAGACATGGCGAGTCTAACGGTTGATGCAG 1801 Query 482 CCACAAGATTATCCCGTAAAAGAAACTTACTAGGACAACCTGAAAACAGTGTTCAGAGAA 541 ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||| Sbjct 1802 CCACAAGATTATCCCGTAAAAGAAACTTACTTGGAAAACCTGAAAGCAGTGTTGAGAGAA 1861 Query 542 TGAGGAATACAGAAATCATGGATTTAGCCCGCATTTTCAAGAGACGGGTTTTCGCCTTCT 601 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1862 TGAGGAATACCGAAATCATGGATTTAGCCCGCATTTTCAAGAAACGGGTTTTCGCCTTCT 1921 Query 602 TAGGCGACAATACTATAT 619 |||| ||||||||||||| Sbjct 1922 TAGGTGACAATACTATAT 1939 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29939551612 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5