BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359729

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34270.1 | Symbols:  | unknown protein; Has 5 Blast hits to ...   350    8e-96


> AT2G34270.1 | Symbols:  | unknown protein; Has 5 Blast hits to 
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr2:14468752-14469876 REVERSE LENGTH=1125
Length=1125

 Score =  350 bits (189),  Expect = 8e-96
 Identities = 228/247 (92%), Gaps = 2/247 (1%)
 Strand=Plus/Plus

Query  159  GACTGAGTCTCGGTTCCAGGAGGCTTTGCAAGAA-GAATCGTCATCCTCTTCAGTGAAAT  217
            |||| || ||||||||||  ||||||||||| || ||||| ||||| |||||| ||||||
Sbjct  393  GACTAAGACTCGGTTCCACAAGGCTTTGCAA-AAGGAATCATCATCTTCTTCAATGAAAT  451

Query  218  GGGGTTTTGCAGAGGCTAAAGATGAAGTAGTTTCTCTTGGGATCAGGTTAACTCATGCGC  277
            |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  452  GGGGTTTTACAGAGGCTAAAGATGAAGTACTTTCTCTTGGGATCAGGTTAACTCATGCGC  511

Query  278  TCATCAAACTCACGTTATTGCGTGTTCATAAGAACGAGAGAGAGAAACAGTTGTGGCTAA  337
            |||||||||||||||||||||||||| | |||||||| |||||||||||||||| |||||
Sbjct  512  TCATCAAACTCACGTTATTGCGTGTTAAGAAGAACGACAGAGAGAAACAGTTGTTGCTAA  571

Query  338  GAAATTGGATCTTTGGGGAGTCTTACAAGAAACAATCTGCTTTAATGTACTTGTTGGACT  397
            || ||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||
Sbjct  572  GAGATTGGATCTTTGATGAGTCTTACGAGAAACAATCTGCTTTAATGTACTTGTTGGACT  631

Query  398  ATCTTCT  404
            |||||||
Sbjct  632  ATCTTCT  638



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5