BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359733
Length=423
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01330.2 | Symbols: | Protein kinase superfamily protein | ... 353 6e-97
> AT4G01330.2 | Symbols: | Protein kinase superfamily protein
| chr4:550349-553016 FORWARD LENGTH=1986
Length=1986
Score = 353 bits (191), Expect = 6e-97
Identities = 205/212 (97%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 184 AGTGAAACGACGTCGTATTCAGGTAGTGGTTATGTTGGACCTGAGGTTTCGCATCTTGGT 243
||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 750 AGTGAAACGGCGTCGTATTCAGGGAGTGGTTGTGTTGGACCTGAGGTTTCGCATCTTGGT 809
Query 244 TGGGGAAGATGGTATACTCTTAGAGAGCTCGAAGCGGCCACGAATGGATTGTGTGAAGAG 303
||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||
Sbjct 810 TGGGGAAGATGGTATACTCTTAGAGAGCTTGAAGCAGCTACTAATGGATTGTGTGAAGAG 869
Query 304 AATGTGATCGGAGAAGGAGGTTATGGGATTGTTTATAGTGGGATTTTAACTGATGGAACT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AATGTGATCGGAGAAGGAGGTTATGGGATTGTTTATAGTGGGATTTTAACTGATGGAACT 929
Query 364 AAAGTCGCTGTCAAGAATCTGCTTAACAACAG 395
||||||||||||||||||||||||||||||||
Sbjct 930 AAAGTCGCTGTCAAGAATCTGCTTAACAACAG 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20056831851
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5