BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359737

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06050.1 | Symbols: PRXIIF, ATPRXIIF | peroxiredoxin IIF | c...   604    1e-172


> AT3G06050.1 | Symbols: PRXIIF, ATPRXIIF | peroxiredoxin IIF | 
chr3:1826073-1827861 REVERSE LENGTH=896
Length=896

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 349/360 (97%), Gaps = 0/360 (0%)
 Strand=Plus/Plus

Query  52   GGGGCTTACACGGGAGTTTGTTCGCAGCAGCATGTGCCTAGCTACAAGAGCCACATTGAT  111
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  299  GGGGCTTACACGGGAGTTTGTTCACAGCAGCATGTGCCTAGCTACAAGAGCCACATTGAT  358

Query  112  AAGTTTAAGGCTAAAGGCATTGATTCTGTCGTATGTGTCTCTGTTAATGATCCCTATGCT  171
            |||||||| || |||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct  359  AAGTTTAAAGCCAAAGGCATTGATTCTGTCATCTGTGTCTCTGTTAATGATCCCTTTGCT  418

Query  172  ATCAATGGTTGGGCTGAGAAGCTTGGTGCCAAAGATGCAATTGAGTTTTATGGGGATTTT  231
            |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  419  ATCAATGGTTGGGCAGAGAAGCTTGGTGCCAAAGATGCAATTGAGTTTTATGGAGATTTT  478

Query  232  GATGGGAAATTCCACAAAAGCTTGGGGCTAGACAAGGATCTCTCTGCTGCATTACTCGGG  291
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  479  GATGGGAAATTTCACAAAAGCTTGGGGCTAGACAAGGATCTCTCTGCTGCATTGCTCGGG  538

Query  292  CCACGGTCTGAGAGATGGTCGGCTTATGTAGAAGACGGTAAGGTTAAGGCGGTGAATGTG  351
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  539  CCACGGTCTGAGAGATGGTCGGCTTATGTAGAAGACGGGAAGGTTAAGGCGGTGAATGTG  598

Query  352  GAAGAAGCACCGTCTGACTTCAAGGTTACAGGGGCAGAAGTCATCTTAGGACAGATCTAA  411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  599  GAAGAAGCACCGTCTGACTTCAAGGTTACAGGGGCAGAAGTCATCTTAGGACAGATCTAA  658



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5