BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359743
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-171... 1081 0.0
AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-172... 340 1e-92
AT5G26860.1 | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr... 211 8e-54
> AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-1719608
REVERSE LENGTH=2775
Length=2775
Score = 1081 bits (585), Expect = 0.0
Identities = 726/790 (92%), Gaps = 25/790 (3%)
Strand=Plus/Plus
Query 57 TCGTCTACCTTCGTACGACGGTTTATTGCATCTTAGGCGGCAAAGCTTAACCCTAAATTC 116
|||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||
Sbjct 45 TCGTCTACCTTCGTACTACGGTTTCTTGCATCTTA--C-ACAAAGCTTAACCCTAAATTC 101
Query 117 TCGCGTTTTCTACGGTGCCCGTCATGTGACTCCTGCGGCTATTCGGGTCGGATCCAACCC 176
|||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| ||
Sbjct 102 CCGCGTTTTCTACGGTGCCCGCCATGTGACTCCTCCGGCTATTCGGATCGGATCCAATCC 161
Query 177 GGTTCAGAG--T-CTACTCTTCAGGGCACCGACTCAGCTAACCGGATGGACCCGGAG-T- 231
||||||||| | |||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 162 GGTTCAGAGTCTACTACTCTTCAGGGCACCGACTCAGCTTACCGGATGGAACCGGAGTTC 221
Query 232 T---G-------GGGTCATCGTGTTTCTTTCTCCCATCGCAGTGACGGTCTCGATCTCTT 281
| | ||||| |||||||||||||||| |||||||||||||| ||||||||||
Sbjct 222 TCGCGATTTATTGGGTCGTCGTGTTTCTTTCTCCGATCGCAGTGACGGTGTCGATCTCTT 281
Query 282 ATCTTCTTCACCGATTGTCTCAACTAACCCTACCCTCGACGATTGTCTAACGGTTATAGC 341
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 282 ATCTTCTTCACCGATTCTCTCAACTAACCCTAACCTCGACGATTCTCTAACGGTTATAGC 341
Query 342 ATTGCCATTGCCTCACAAGCCTCTTATTCCTGGCTTTTACATGCCAATCTATGTCAAGGA 401
|||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 342 ATTGCCGTTGCCTCACAAACCTCTTATTCCTGGCTTTTACATGCCAATCCATGTCAAGGA 401
Query 402 TCCTAAAGTTCTTGCAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTTGGGGC 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 402 TCCTAAAGTTCTTGCAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTGGGGGC 461
Query 462 TTTCCTTTTGAAGGATGGCGCTTCTACTGATTCATCTTCTTGCTCTGAAAC--AA-ATAA 518
|||||||||||||||| |||| |||||||||||||||||| |||||||||| || ||||
Sbjct 462 TTTCCTTTTGAAGGATTGCGCGTCTACTGATTCATCTTCTCGCTCTGAAACTGAAGATAA 521
Query 519 TGTTGTCCACAAGTTTaaaggcaaagggaaaccaaaaaagaaaagaagaaaagaGTTGCT 578
|||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 522 TGTTGTTGAGAAGTTTAAAGTCAAAGGGAAACCAAAAAAGAAAAGAAGAAAAGAGTTGCT 581
Query 579 TAACCGTATTTACCAAGTGGGCACTCTTGCTCAGATTTCAAGTATCCAAGGTGAGCAAGT 638
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TAACCGTATTCACCAAGTTGGCACTCTTGCTCAGATTTCAAGTATCCAAGGTGAGCAAGT 641
Query 639 CATCCTTGTTGGTCGCAGACGACTTCGAATAAAAGAGATGGTGAGTGAAGATCCTCTAAC 698
||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 642 CATCCTTGTTGGTCGCAGAAGACTTATAATAGAAGAGATGGTGAGTGAAGATCCTCTAAC 701
Query 699 CGTCA-ACGTTTACCATTTAAAGGATAAGCCATATGACAAGGACAATGCTGTCATCAAGG 757
||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CGTCAGA-GTTGACCATCTAAAGGATAAGCCATATGACAAGGACAATGCTGTCATCAAGG 760
Query 758 CAAGCTACGTCGTAGTTATCTCGA-TGCTTAGGGATGTCTTAAAGACAAATTCACTCTGG 816
|||||||||| | |||||| |||| | |||||||| ||||||||||||||||||||||||
Sbjct 761 CAAGCTACGTTGAAGTTATTTCGACT-CTTAGGGAAGTCTTAAAGACAAATTCACTCTGG 819
Query 817 AGAGATCAAG 826
||||||||||
Sbjct 820 AGAGATCAAG 829
> AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-1725182
REVERSE LENGTH=2829
Length=2829
Score = 340 bits (184), Expect = 1e-92
Identities = 268/307 (87%), Gaps = 12/307 (4%)
Strand=Plus/Plus
Query 566 gaaaagaGTTGCTTAACCGTATTTACCAAGTGGGCACTCTTGCTCAGATTTCAAGTATCC 625
||||||||||| ||||||| ||| | |||| ||||| ||||| ||||||||||||||||
Sbjct 440 GAAAAGAGTTGATTAACCGGATTCATGAAGTTGGCACACTTGCCCAGATTTCAAGTATCC 499
Query 626 AAGGTGAGCAAGTCATCCTTGTTGGTCGCAGACGACTTCGAATAA-A-AGA-GATG-GT- 680
|||||||||||||||||||| |||||| ||||| ||||||||||| | ||| | || ||
Sbjct 500 AAGGTGAGCAAGTCATCCTTATTGGTCACAGACAACTTCGAATAACAGAGATGGTGAGTG 559
Query 681 -GAGTGAAGATCCTCTAACCGTCAACGTTTACCATTTAAAGGATAAGCCATATGACAAGG 739
|||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 560 AGAGTGAAGATCCCCTAACCGTCAAAGTTGACCATCTAAAGGATAAGCCATATGACAAGG 619
Query 740 ACAATGCTGTCATCAAGGCAAGC-TACGT-CGTAGTTATCTCGATGCTTAGGGATGTCTT 797
|| ||| |||||||||||||| | ||| | | ||| || |||| ||||||||||||||
Sbjct 620 ACGATGATGTCATCAAGGCAA-CATACTTTCA-AGTGATGTCGACACTTAGGGATGTCTT 677
Query 798 AAAGACAAATTCACTCTGGAGAGATCAAGTTCAGACATATACCCAGGCATGTT-TGCTTC 856
|||||||| |||||||||||||||||| |||| |||||||||||||||||||| | ||||
Sbjct 678 AAAGACAACTTCACTCTGGAGAGATCATGTTCGGACATATACCCAGGCATGTTCT-CTTC 736
Query 857 ATATTTG 863
|||||||
Sbjct 737 ATATTTG 743
Score = 298 bits (161), Expect = 6e-80
Identities = 221/250 (88%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 297 TGTCTCAACTAACCCTAC-CCTCGACGATTGTCTAACGGTTATAGCATTGCCATTGCCTC 355
||||||| |||| ||| | ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 198 TGTCTCAGCTAAACCT-CACCTGGACGATTGTCTAACGGTTATAGCATTGCCATTGCCCC 256
Query 356 ACAAGCCTCTTATTCCTGGCTTTTACATGCCAATCTATGTCAAGGATCCTAAAGTTCTTG 415
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 257 ACAAGCCTCTTATTCCTGGCTTTTACATGCCAATATATGTCAAGGATCCTAAAGTTCTTG 316
Query 416 CAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTTGGGGCTTTCCTTTTGAAGG 475
|||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||
Sbjct 317 CAGCTTTACAAGAGAGTAGAAGACAACAAGCTCCATATGCAGGGGCTTTCCTTTTGAAGG 376
Query 476 ATGGCGCTTC-TACTGATTCATCTTCTTGCTCTGAAACAAATAATGTTGTCCACAAGTTT 534
||| ||| || | |||| |||||||| |||||||||| | ||| || | | |||||
Sbjct 377 ATGACGCGTCAT-CTGACTCATCTTCGAGCTCTGAAACTGAGAATATTCTAGAGAAGTTG 435
Query 535 aaaggcaaag 544
||||| ||||
Sbjct 436 AAAGGAAAAG 445
> AT5G26860.1 | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr5:9451048-9457000
FORWARD LENGTH=3327
Length=3327
Score = 211 bits (114), Expect = 8e-54
Identities = 187/222 (84%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 282 ATCTTCTTCACCGATTGT-CTCAACTAACCCTA-CCCTCGACGATTGTCTAACGGTTATA 339
|||||| || ||||||| | | |||||||||| ||| || |||||| |||||||| ||
Sbjct 381 ATCTTCGTCTGCGATTGTGC-CCACTAACCCTAGGCCT-GAAGATTGTTTAACGGTTCTA 438
Query 340 GCATTGCCATTGCCTCACAAGCCTCTTATTCCTGGCTTTTACATGCCAATCTATGTCAAG 399
|||||||| |||| || | ||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 439 GCATTGCCGGTGCCACATAGGCCGCTTTTTCCTGGTTTTTACATGCCAATCTATGTCAAG 498
Query 400 GATCCTAAAGTTCTTGCAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTTGGG 459
||||||||||| || ||||| ||||||||||||| ||||| |||| ||||||||| ||
Sbjct 499 GATCCTAAAGTACTCGCAGCCTTACAAGAGAGCAGAAGACGACAAGCTCCATATGCAGGA 558
Query 460 GCTTTCCTTTTGAAGGATGGCGCTTCTA-CTGATTCATCTTC 500
||||||||| ||||||||| | | || | |||||||||||||
Sbjct 559 GCTTTCCTTCTGAAGGATGACCCATC-AGCTGATTCATCTTC 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5