BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg359743 Length=864 Score E Sequences producing significant alignments: (Bits) Value AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-171... 1081 0.0 AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-172... 340 1e-92 AT5G26860.1 | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr... 211 8e-54 > AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-1719608 REVERSE LENGTH=2775 Length=2775 Score = 1081 bits (585), Expect = 0.0 Identities = 726/790 (92%), Gaps = 25/790 (3%) Strand=Plus/Plus Query 57 TCGTCTACCTTCGTACGACGGTTTATTGCATCTTAGGCGGCAAAGCTTAACCCTAAATTC 116 |||||||||||||||| ||||||| |||||||||| | |||||||||||||||||||| Sbjct 45 TCGTCTACCTTCGTACTACGGTTTCTTGCATCTTA--C-ACAAAGCTTAACCCTAAATTC 101 Query 117 TCGCGTTTTCTACGGTGCCCGTCATGTGACTCCTGCGGCTATTCGGGTCGGATCCAACCC 176 |||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| || Sbjct 102 CCGCGTTTTCTACGGTGCCCGCCATGTGACTCCTCCGGCTATTCGGATCGGATCCAATCC 161 Query 177 GGTTCAGAG--T-CTACTCTTCAGGGCACCGACTCAGCTAACCGGATGGACCCGGAG-T- 231 ||||||||| | |||||||||||||||||||||||||| |||||||||| |||||| | Sbjct 162 GGTTCAGAGTCTACTACTCTTCAGGGCACCGACTCAGCTTACCGGATGGAACCGGAGTTC 221 Query 232 T---G-------GGGTCATCGTGTTTCTTTCTCCCATCGCAGTGACGGTCTCGATCTCTT 281 | | ||||| |||||||||||||||| |||||||||||||| |||||||||| Sbjct 222 TCGCGATTTATTGGGTCGTCGTGTTTCTTTCTCCGATCGCAGTGACGGTGTCGATCTCTT 281 Query 282 ATCTTCTTCACCGATTGTCTCAACTAACCCTACCCTCGACGATTGTCTAACGGTTATAGC 341 |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 282 ATCTTCTTCACCGATTCTCTCAACTAACCCTAACCTCGACGATTCTCTAACGGTTATAGC 341 Query 342 ATTGCCATTGCCTCACAAGCCTCTTATTCCTGGCTTTTACATGCCAATCTATGTCAAGGA 401 |||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 342 ATTGCCGTTGCCTCACAAACCTCTTATTCCTGGCTTTTACATGCCAATCCATGTCAAGGA 401 Query 402 TCCTAAAGTTCTTGCAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTTGGGGC 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 402 TCCTAAAGTTCTTGCAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTGGGGGC 461 Query 462 TTTCCTTTTGAAGGATGGCGCTTCTACTGATTCATCTTCTTGCTCTGAAAC--AA-ATAA 518 |||||||||||||||| |||| |||||||||||||||||| |||||||||| || |||| Sbjct 462 TTTCCTTTTGAAGGATTGCGCGTCTACTGATTCATCTTCTCGCTCTGAAACTGAAGATAA 521 Query 519 TGTTGTCCACAAGTTTaaaggcaaagggaaaccaaaaaagaaaagaagaaaagaGTTGCT 578 |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 522 TGTTGTTGAGAAGTTTAAAGTCAAAGGGAAACCAAAAAAGAAAAGAAGAAAAGAGTTGCT 581 Query 579 TAACCGTATTTACCAAGTGGGCACTCTTGCTCAGATTTCAAGTATCCAAGGTGAGCAAGT 638 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 582 TAACCGTATTCACCAAGTTGGCACTCTTGCTCAGATTTCAAGTATCCAAGGTGAGCAAGT 641 Query 639 CATCCTTGTTGGTCGCAGACGACTTCGAATAAAAGAGATGGTGAGTGAAGATCCTCTAAC 698 ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| Sbjct 642 CATCCTTGTTGGTCGCAGAAGACTTATAATAGAAGAGATGGTGAGTGAAGATCCTCTAAC 701 Query 699 CGTCA-ACGTTTACCATTTAAAGGATAAGCCATATGACAAGGACAATGCTGTCATCAAGG 757 ||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 702 CGTCAGA-GTTGACCATCTAAAGGATAAGCCATATGACAAGGACAATGCTGTCATCAAGG 760 Query 758 CAAGCTACGTCGTAGTTATCTCGA-TGCTTAGGGATGTCTTAAAGACAAATTCACTCTGG 816 |||||||||| | |||||| |||| | |||||||| |||||||||||||||||||||||| Sbjct 761 CAAGCTACGTTGAAGTTATTTCGACT-CTTAGGGAAGTCTTAAAGACAAATTCACTCTGG 819 Query 817 AGAGATCAAG 826 |||||||||| Sbjct 820 AGAGATCAAG 829 > AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-1725182 REVERSE LENGTH=2829 Length=2829 Score = 340 bits (184), Expect = 1e-92 Identities = 268/307 (87%), Gaps = 12/307 (4%) Strand=Plus/Plus Query 566 gaaaagaGTTGCTTAACCGTATTTACCAAGTGGGCACTCTTGCTCAGATTTCAAGTATCC 625 ||||||||||| ||||||| ||| | |||| ||||| ||||| |||||||||||||||| Sbjct 440 GAAAAGAGTTGATTAACCGGATTCATGAAGTTGGCACACTTGCCCAGATTTCAAGTATCC 499 Query 626 AAGGTGAGCAAGTCATCCTTGTTGGTCGCAGACGACTTCGAATAA-A-AGA-GATG-GT- 680 |||||||||||||||||||| |||||| ||||| ||||||||||| | ||| | || || Sbjct 500 AAGGTGAGCAAGTCATCCTTATTGGTCACAGACAACTTCGAATAACAGAGATGGTGAGTG 559 Query 681 -GAGTGAAGATCCTCTAACCGTCAACGTTTACCATTTAAAGGATAAGCCATATGACAAGG 739 |||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||| Sbjct 560 AGAGTGAAGATCCCCTAACCGTCAAAGTTGACCATCTAAAGGATAAGCCATATGACAAGG 619 Query 740 ACAATGCTGTCATCAAGGCAAGC-TACGT-CGTAGTTATCTCGATGCTTAGGGATGTCTT 797 || ||| |||||||||||||| | ||| | | ||| || |||| |||||||||||||| Sbjct 620 ACGATGATGTCATCAAGGCAA-CATACTTTCA-AGTGATGTCGACACTTAGGGATGTCTT 677 Query 798 AAAGACAAATTCACTCTGGAGAGATCAAGTTCAGACATATACCCAGGCATGTT-TGCTTC 856 |||||||| |||||||||||||||||| |||| |||||||||||||||||||| | |||| Sbjct 678 AAAGACAACTTCACTCTGGAGAGATCATGTTCGGACATATACCCAGGCATGTTCT-CTTC 736 Query 857 ATATTTG 863 ||||||| Sbjct 737 ATATTTG 743 Score = 298 bits (161), Expect = 6e-80 Identities = 221/250 (88%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 297 TGTCTCAACTAACCCTAC-CCTCGACGATTGTCTAACGGTTATAGCATTGCCATTGCCTC 355 ||||||| |||| ||| | ||| ||||||||||||||||||||||||||||||||||| | Sbjct 198 TGTCTCAGCTAAACCT-CACCTGGACGATTGTCTAACGGTTATAGCATTGCCATTGCCCC 256 Query 356 ACAAGCCTCTTATTCCTGGCTTTTACATGCCAATCTATGTCAAGGATCCTAAAGTTCTTG 415 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 257 ACAAGCCTCTTATTCCTGGCTTTTACATGCCAATATATGTCAAGGATCCTAAAGTTCTTG 316 Query 416 CAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTTGGGGCTTTCCTTTTGAAGG 475 |||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||| Sbjct 317 CAGCTTTACAAGAGAGTAGAAGACAACAAGCTCCATATGCAGGGGCTTTCCTTTTGAAGG 376 Query 476 ATGGCGCTTC-TACTGATTCATCTTCTTGCTCTGAAACAAATAATGTTGTCCACAAGTTT 534 ||| ||| || | |||| |||||||| |||||||||| | ||| || | | ||||| Sbjct 377 ATGACGCGTCAT-CTGACTCATCTTCGAGCTCTGAAACTGAGAATATTCTAGAGAAGTTG 435 Query 535 aaaggcaaag 544 ||||| |||| Sbjct 436 AAAGGAAAAG 445 > AT5G26860.1 | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr5:9451048-9457000 FORWARD LENGTH=3327 Length=3327 Score = 211 bits (114), Expect = 8e-54 Identities = 187/222 (84%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 282 ATCTTCTTCACCGATTGT-CTCAACTAACCCTA-CCCTCGACGATTGTCTAACGGTTATA 339 |||||| || ||||||| | | |||||||||| ||| || |||||| |||||||| || Sbjct 381 ATCTTCGTCTGCGATTGTGC-CCACTAACCCTAGGCCT-GAAGATTGTTTAACGGTTCTA 438 Query 340 GCATTGCCATTGCCTCACAAGCCTCTTATTCCTGGCTTTTACATGCCAATCTATGTCAAG 399 |||||||| |||| || | ||| ||| ||||||| |||||||||||||||||||||||| Sbjct 439 GCATTGCCGGTGCCACATAGGCCGCTTTTTCCTGGTTTTTACATGCCAATCTATGTCAAG 498 Query 400 GATCCTAAAGTTCTTGCAGCTTTACAAGAGAGCACAAGACAACAATCTCCATATGTTGGG 459 ||||||||||| || ||||| ||||||||||||| ||||| |||| ||||||||| || Sbjct 499 GATCCTAAAGTACTCGCAGCCTTACAAGAGAGCAGAAGACGACAAGCTCCATATGCAGGA 558 Query 460 GCTTTCCTTTTGAAGGATGGCGCTTCTA-CTGATTCATCTTC 500 ||||||||| ||||||||| | | || | ||||||||||||| Sbjct 559 GCTTTCCTTCTGAAGGATGACCCATC-AGCTGATTCATCTTC 599 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42146449333 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5