BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359756

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39980.1 | Symbols:  | HXXXD-type acyl-transferase family pr...   560    3e-159
  AT2G39975.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: C2 calciu...   560    3e-159


> AT2G39980.1 | Symbols:  | HXXXD-type acyl-transferase family 
protein | chr2:16687673-16689956 REVERSE LENGTH=2284
Length=2284

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 357/382 (93%), Gaps = 8/382 (2%)
 Strand=Plus/Minus

Query  1     ATGGACTTATTTGTAATGGTAGTTGGAGCATCAGGAATTGGCGACGGTGGTG-ATAAGAA  59
             ||||||||||| ||||||||||| |||||||||||||||||||||||||||| | || ||
Sbjct  2086  ATGGACTTATTCGTAATGGTAGTAGGAGCATCAGGAATTGGCGACGGTGGTGAACAA-AA  2028

Query  60    ATACAACTACAAAG-TG-GTAGCTTGGACAAACGAAGATGATCGACGGCAAACAAAGATT  117
             |||||||||| ||| || | ||||||||| ||||||||||||| ||| ||||||||||||
Sbjct  2027  ATACAACTAC-AAGTTGAG-AGCTTGGACTAACGAAGATGATCCACGCCAAACAAAGATT  1970

Query  118   GTAACAACAAACGCAGATCCTGAGTTCCGTGAGGTTTTGCATCTTCCTCAAAACAAGGCT  177
             || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1969  GTGACAACAAACGCAGATCCTGAGTTCCGTGAGGTTTTGCATCTTCCTCAAAACATGGCT  1910

Query  178   GCATCGTTTCTCAATTTGGAGTTTTTCAGTGTAAATTCAGCTGACACTGACGCAttttt-  236
              |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  1909  TCATCTTTTCTCAATTTGGAGTTGTTCAGTGTAAATTCAGCTGACACTGACGCATTTTTC  1850

Query  237   ttGTGGGAGGGCAAATACAGCATTGCCCATGAAGACAAATGCTAATGTGTACCGTAAGGT  296
              | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct  1849  AT-TGGGAGGGCAAATACAGCATTGCCCATGAAAACAAACGCTAATGTGTACCGTAAGAT  1791

Query  297   CAAACTTGAGAACTTGGAGACCAGTGGAAATATCGTAACTGTTGGTTATCTTGAAGTTTA  356
             ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1790  CAAACTTCAGAACTTGGACACCAGTGGAAATATCGTAACTGTTGGTTATCTTGAAGTTTA  1731

Query  357   TCTTGGCCTCGAGACTGGTTAA  378
             ||||||||||||||||||||||
Sbjct  1730  TCTTGGCCTCGAGACTGGTTAA  1709


> AT2G39975.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: C2 calcium-dependent 
membrane targeting (InterPro:IPR000008); BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40745.1); 
Has 7 Blast hits to 7 proteins in 2 species: 
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 
chr2:16687871-16688248 FORWARD LENGTH=378
Length=378

 Score =  560 bits (303),  Expect = 3e-159
 Identities = 357/382 (93%), Gaps = 8/382 (2%)
 Strand=Plus/Plus

Query  1    ATGGACTTATTTGTAATGGTAGTTGGAGCATCAGGAATTGGCGACGGTGGTG-ATAAGAA  59
            ||||||||||| ||||||||||| |||||||||||||||||||||||||||| | || ||
Sbjct  1    ATGGACTTATTCGTAATGGTAGTAGGAGCATCAGGAATTGGCGACGGTGGTGAACAA-AA  59

Query  60   ATACAACTACAAAG-TG-GTAGCTTGGACAAACGAAGATGATCGACGGCAAACAAAGATT  117
            |||||||||| ||| || | ||||||||| ||||||||||||| ||| ||||||||||||
Sbjct  60   ATACAACTAC-AAGTTGAG-AGCTTGGACTAACGAAGATGATCCACGCCAAACAAAGATT  117

Query  118  GTAACAACAAACGCAGATCCTGAGTTCCGTGAGGTTTTGCATCTTCCTCAAAACAAGGCT  177
            || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  118  GTGACAACAAACGCAGATCCTGAGTTCCGTGAGGTTTTGCATCTTCCTCAAAACATGGCT  177

Query  178  GCATCGTTTCTCAATTTGGAGTTTTTCAGTGTAAATTCAGCTGACACTGACGCAttttt-  236
             |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  178  TCATCTTTTCTCAATTTGGAGTTGTTCAGTGTAAATTCAGCTGACACTGACGCATTTTTC  237

Query  237  ttGTGGGAGGGCAAATACAGCATTGCCCATGAAGACAAATGCTAATGTGTACCGTAAGGT  296
             | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct  238  AT-TGGGAGGGCAAATACAGCATTGCCCATGAAAACAAACGCTAATGTGTACCGTAAGAT  296

Query  297  CAAACTTGAGAACTTGGAGACCAGTGGAAATATCGTAACTGTTGGTTATCTTGAAGTTTA  356
            ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CAAACTTCAGAACTTGGACACCAGTGGAAATATCGTAACTGTTGGTTATCTTGAAGTTTA  356

Query  357  TCTTGGCCTCGAGACTGGTTAA  378
            ||||||||||||||||||||||
Sbjct  357  TCTTGGCCTCGAGACTGGTTAA  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5