BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359757
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48900.1 | Symbols: | Pectin lyase-like superfamily protein... 942 0.0
AT3G07010.1 | Symbols: | Pectin lyase-like superfamily protein... 523 6e-148
> AT5G48900.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:19825137-19829092 FORWARD LENGTH=1540
Length=1540
Score = 942 bits (510), Expect = 0.0
Identities = 573/603 (95%), Gaps = 6/603 (1%)
Strand=Plus/Plus
Query 1 ATGGCTATTACACAAATACTTGTCCTCTTTGCTTCTGCATTACTCCTATCAATGTTCTTC 60
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 104 ATGGCTGTTACACAAATACTTGTCGTCTTTGCTTCTGCATTACTCCTATCAATGTTCTTC 163
Query 61 ACTGGCGTCGATTCCACAAGGTCTAATGAAACATGGCATGAACATGCAGTTGAGAATCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 ACTGGCGTCGATTCCACAAGGTCTAATGAAACATGGCATGAACATGCAGTTGAGAATCCA 223
Query 121 GAGGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGA-ACGAAGAAGATT 179
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 224 GAGGAAGTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGCGA-GAAGAAGATT 282
Query 180 AGGTTACTTCTCATGCTCAACCGGAAATCCAATCGACGACTGTTGGCGTTGTGATCGGAG 239
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 283 AGGATACTTCTCATGCTCAACCGGAAATCCAATCGATGATTGTTGGCGTTGTGACCGGAG 342
Query 240 ATGGCAATCTCGGCGAAAAGCTT-TAGCCAATTGCGCAATTGGATTCGGTCGCAACGCAA 298
||||||||| ||||||||| | | |||||||||||||||| || ||||||||||| ||||
Sbjct 343 ATGGCAATCCCGGCGAAAA-CATCTAGCCAATTGCGCAATCGGGTTCGGTCGCAATGCAA 401
Query 299 TCGGTGGCCGAGACGGTCGTTACTACGTAGT-AGACGACCCAAACGACGATAACCCGGTT 357
|||| || |||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 402 TCGGCGGTAGAGACGGTCGTTACTACGTAGTGAGT-GATCCAAACGACGATAACCCGGTT 460
Query 358 AACCCTAAACCGGGAACATTACGTCACGCAGTAATTCAAGAAGAACCACTATGGATTGTC 417
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 461 AACCCTAAACCGGGAACATTACGTCACGCAGTAATTCAAGAAGAACCATTATGGATCGTC 520
Query 418 TTTAAACGTGACATGGTCATAACATTAAAAGAAGAACTAATCATGAACAGTTTCAAAACA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TTTAAACGTGACATGGTCATAACATTAAAAGAAGAACTAATCATGAACAGTTTCAAAACA 580
Query 478 ATCGATGGTCGTGGTGTGAATGTTCACATAGCTAATGGTGCATGTATCACGATTCAGTTC 537
|||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||
Sbjct 581 ATCGATGGTCGTGGCGTCAACGTTCACATAGCTAATGGTGCATGCATCACGATTCAGTTC 640
Query 538 GTGACTAACATTATCATTCATGGGATTCATATTCATGATTGTAGACCAACTGGTAACGCT 597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 641 GTGACTAACATTATCATTCATGGGATACATATTCATGATTGTAGACCAACTGGTAACGCT 700
Query 598 ATG 600
|||
Sbjct 701 ATG 703
> AT3G07010.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2212728-2216483 REVERSE LENGTH=1673
Length=1673
Score = 523 bits (283), Expect = 6e-148
Identities = 501/603 (83%), Gaps = 27/603 (4%)
Strand=Plus/Plus
Query 11 CACAAATACTTGTCCTCTTTGCTTCTGCATTACTCCTATCAATG-T-TCTTCACT-GGCG 67
|||||| |||| | |||||||||||||||||||| ||| | | | | | || | | ||||
Sbjct 186 CACAAA-ACTTATTCTCTTTGCTTCTGCATTACTTCTAAC-A-GCTCTATTTA-TCGGCG 241
Query 68 TCGATTCCA-CAAGGTCTAATGAAACATGGCATGAACATGCAGTTGAGAATCCAGAGGAA 126
| | | || | ||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 242 T-TAATGCATCCAGGTCCAATGAAACATGGCATGAACATGCAGTTGAGAACCCAGATGAA 300
Query 127 GTAGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAACGAAGAAGATTAGGTTAC 186
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 301 GTCGCTGCCATGGTGGACATGAGCATTCGAAACAGCACAGAGCGGAGAAGATTAGGTTAC 360
Query 187 TTCTCATGCTCAACCGGAAATCCAATCGACGACTGTTGGCGTTGTGATCGGAGATGGCAA 246
||||| ||| | ||||| || ||||||||||| || |||||||| || || | ||||||
Sbjct 361 TTCTCCTGCGCCACCGGCAACCCAATCGACGATTGCTGGCGTTGCGACCGCAAATGGCAG 420
Query 247 TCTCGG-CGAAAA-GCTTTAGCCAATTGCGCAATTGGATTCGGTCGCAACGCAATCGGTG 304
||| | || ||| | ||||||| ||||| |||| ||||| || |||||||||||||| |
Sbjct 421 -CTCCGTCGCAAACG-TTTAGCCGATTGCTCAATCGGATTTGGCCGCAACGCAATCGGAG 478
Query 305 GCCGAGACGGTCGTTACTACGTAGTAGAC-GACCCA--A-ACGACGATAACCCGGTTAA- 359
|||| |||||||||| |||||| ||| || ||||| | |||||||| |||| ||||
Sbjct 479 GCCGCGACGGTCGTTTCTACGTCGTA-ACCGACCCTGGAGACGACGAT--CCCG-TTAAT 534
Query 360 CCCTAAACCGGGAACATTACGTCACGCAGTAATTCAAGAAGAACCACTATGGATTGTCTT 419
||| | |||||||||| | |||||||| || |||||||| |||||||| ||||| ||||
Sbjct 535 CCC-ATACCGGGAACACTCCGTCACGCCGTGATTCAAGACGAACCACTCTGGATCATCTT 593
Query 420 TAAACGTGACATGGTCATAACATTAAAAG-AAGAACTAATCATGAACAGTTTCAAAACAA 478
||||| |||||||| ||||| || || | |||| || ||||||||||| |||||||| |
Sbjct 594 CAAACGCGACATGGTTATAACCTTGAA-GCAAGAGCTGATCATGAACAGCTTCAAAACCA 652
Query 479 TCGATGGTCGTGGTGTGAATGTTCACATAGCTAATGGTGCATGTATCACGATTCAGTTCG 538
|||||||||||||||| ||||||||||| |||||||| || ||| |||||||||| | ||
Sbjct 653 TCGATGGTCGTGGTGTCAATGTTCACATCGCTAATGGAGCTTGTCTCACGATTCAATACG 712
Query 539 TGACTAACATTATCATTCATGGGATTCATATTCATGATTGTA-GACCAACTGGTAACGCT 597
| || |||||||| | |||||||||||| | ||||| |||| | || || |||||||||
Sbjct 713 TTACGAACATTATTGTCCATGGGATTCATGTCCATGACTGTAAG-CCTACGGGTAACGCT 771
Query 598 ATG 600
|||
Sbjct 772 ATG 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5