BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359762
Length=584
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | histone deacetylase... 196 2e-49
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like... 108 7e-23
> AT2G27840.1 | Symbols: HDT4, HDA13, HDT04 | histone deacetylase-related
/ HD-related | chr2:11861994-11863884 FORWARD LENGTH=880
Length=880
Score = 196 bits (106), Expect = 2e-49
Identities = 209/254 (82%), Gaps = 26/254 (10%)
Strand=Plus/Plus
Query 1 ATTCTGAGTTAGAGGAATTTATGGAACAACAAATTGATGCTTTGCCTCAAAATGAGATGA 60
||||||||||||| |||| ||||||||||||||||| ||||||||||| |
Sbjct 417 ATTCTGAGTTAGATGAATATATGGAACAACAAATTGCTGCTTTGCCTC-----------A 465
Query 61 ATAATGAGATGAATCCTGAAGAAGATGGGT-CATCCGACGACTCAGATGAGATGGGTTTG 119
| |||||||| ||||||||||||||| | | || | ||||||||||||||||||||||
Sbjct 466 A-AATGAGATCAATCCTGAAGAAGAT-GATGAAT-C--CGACTCAGATGAGATGGGTTTG 520
Query 120 GACGAGGATGATGAGTCTTCGGATGAAGAAGACGTAGAGGCTGAAGCAC----A--GGT- 172
|||||||||||||| ||||| ||||||||||| |||||||||||||||| | |||
Sbjct 521 GACGAGGATGATGACTCTTCAGATGAAGAAGATGTAGAGGCTGAAGCACCTTTAAAGGTG 580
Query 173 --TCCTCCGAGCAAGAAGATGTCAAATGGTATACATGGGATACCTAAAGGTGGAGACAAG 230
|||||||||||| |||||| |||||||| | || |||| ||||||||||| | |||
Sbjct 581 GCTCCTCCGAGCAAAAAGATGCCAAATGGTGCATTTGAGATAGCTAAAGGTGGAAAGAAG 640
Query 231 AACAAGTCATCAGG 244
||||||||||||||
Sbjct 641 AACAAGTCATCAGG 654
> AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like
1 | chr1:18098095-18101623 FORWARD LENGTH=1966
Length=1966
Score = 108 bits (58), Expect = 7e-23
Identities = 64/67 (96%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 467 TGCTGCTACCAAGGCTGCAAGCAGTTCAGATTCATCTGATGAAGATTCTGATGAGGAAAG 526
||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 712 TGCTGCTGCCAAGGCTGCAAGCAGCTCAGATTCATCAGATGAAGATTCTGATGAGGAAAG 771
Query 527 TGAAGAT 533
|||||||
Sbjct 772 TGAAGAT 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28080888173
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5