BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359763
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07530.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beta-Casp... 1775 0.0
AT3G06610.1 | Symbols: | DNA-binding enhancer protein-related ... 163 4e-39
> AT3G07530.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beta-Casp
domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein
match is: cleavage and polyadenylation specificity factor
73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits
to 615 proteins in 160 species: Archae - 54; Bacteria - 6;
Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes
- 94 (source: NCBI BLink). | chr3:2400793-2404280
FORWARD LENGTH=2100
Length=2100
Score = 1775 bits (961), Expect = 0.0
Identities = 1137/1219 (93%), Gaps = 24/1219 (2%)
Strand=Plus/Plus
Query 2 TGAGAATGG-TGTATTTCT-CTGA-GC-G-TAATATACTATATATTCACAAC-AGCAGTG 55
|||| |||| ||||||||| |||| | | ||||| | |||||| | |||| | |||||
Sbjct 879 TGAGGATGGTTGTATTTCTCCTGACTCAGATAATA-ATTATATA-T--CAACAATCAGTG 934
Query 56 ACAACAAGGATTCATTACTAAACACTGAAGACAGCTTAGAAGAGATGGATAAACTAGAGT 115
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 935 ACAACAAGGATTCATTACTAAACACTGAAGACAGCTTAGAAGAGATGGAGAAACTAGCGT 994
Query 116 TTATTTGTTCATGTGCTGCAGAATCTTCTGATGCTGGTGGCTCAACCTTAATAACGATTA 175
|| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 995 TTGTTTGTTCATGTGCTGCAGAATCTGCTGATGCTGGTGGCTCAACCTTGATAACGATTA 1054
Query 176 CTAGAATTGGTATAGTTCTGCAGCTCCTAGAGCTAATGTCAAATTCTCTTGAATCCTCGT 235
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1055 CTAGAATTGGGATAGTTCTGCAGCTCCTAGAGCTATTGTCAAATTCTCTTGAATCCTCGT 1114
Query 236 CTCTAAAGGTTCCAATTTTTGTAATATCTTCTGTGGCAGAAGAGTTATTGGCATACACAA 295
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1115 CTCTAAAGGTTCCAATCTTTGTAATATCTTCTGTGGCAGAAGAGCTATTGGCATACACAA 1174
Query 296 ACACCATACCCGAGTGGCTGTGCGAGCAACGACAGGAGAAGTTAATTTTAGGAGAACCAT 355
||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1175 ACACCATACCCGAATGGCTGTGCGAACAACGACAGGAGAAGTTAATTTCAGGAGAACCAT 1234
Query 356 CATTTGGCCATCTTAAATTCATTAAAGACAAGAAGATCCATTTGTTTCCTGCCTTTCATT 415
| |||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 1235 CGTTTGGCCATCTTAAATTCATCAAAAACAAGAAGATCCATTTGTTTCCTGCCATTCATT 1294
Query 416 CACCCAACTT-A---AT--------AACGAGTTGGCAGGAACCATGCATCATATTTGCTC 463
|||||||||| | || ||||||||||||||||||||||||| ||||||||
Sbjct 1295 CACCCAACTTAATTTATGCGAACAGAACGAGTTGGCAGGAACCATGCATCGTATTTGCTT 1354
Query 464 CTCACTGGAGTTTGCGACTTGGCCCTTCTGTCCAACTTCTTCAGCGTTGGCGTGGAGATC 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 CTCACTGGAGTTTGCGACTTGGCCCTTCTGTCCAACTTCTTCAGCGTTGGCGTGGAGATC 1414
Query 524 CAAAATCATTGCTTGTTCTTGAGGATGGGATTAGTTCAGGTTTAGGACTTCTCCCTTTTA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 CAAAATCATTGCTTGTTCTTGAGGATGGGATTAGTTCAGGTTTAGGACTTCTCCCTTTTA 1474
Query 584 GACCGATAGCAATGAAAATTCTCCAATGTTCATTTCTTTCTGGAATAAGGTTGCAAAAGC 643
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1475 GACCGATAGCGATGAAAATTCTCCAATGTTCATTTCTTTCTGGAATAAGGTTGCAGAAGC 1534
Query 644 TCCCAACACTTCTTTCCGTTTTGCAGCCAAAGATTGTCTTGGTCCCTGATGCTGTCAATC 703
||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1535 TCCCAACACTTGTATCCGTTTTGCAGCCAAAGATTTTCTTGGTCCCTGATGCTGTCAATC 1594
Query 704 AGAGGATCAATTTTGCTGCAATGAAGACAATATCAATCCTGAATTACTTTGAAAACAAGA 763
||||||||| ||| ||||| || ||||| || |||||||||||||||||||| |||||||
Sbjct 1595 AGAGGATCAGTTTGGCTGCGATAAAGACCATCTCAATCCTGAATTACTTTGAGAACAAGA 1654
Query 764 CGCTACGTGTACCAAGAATTGCAGACAATCCAAGCGTAGAGATTACGACAGACTTGGCCT 823
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1655 CGCTACATGTACCAAGAATTGTAGACAATCCAAGCGTAGAGATTACGACAGACTTGGCCT 1714
Query 824 CCAAATTGAGCTGGAGAAAACTGAGACAACGTGAAAACTTTGGTATTGCAAGATTGAAAG 883
||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||
Sbjct 1715 CCAAATTGAGCTGGAGAAAACTGAGGCAACGTGAAAGCTTCGGTATTGCAAGATTGAAAG 1774
Query 884 GTGGGCTTCTGATGGAAGATGGGAAACACAGATTAGTTTCAGGGTTGGAGCAGGAAGAAA 943
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1775 GTGGGCTTCTGATGGAAGATGGGAAACACAGATTAGTTTCCGGGTTGGAGCAGGAAGAAA 1834
Query 944 GTTCAGGAAAGGCTCGGCCATTGAGGCATTGGGGCTCAGTGGCTCCGGAATCACTTTTAG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1835 GTTCAGGAAAGGCTCGGCCATTGAGGCATTGGGGCTCAGTGGCTCCGGAATTACTTTTAG 1894
Query 1004 ACGCTTTACTGAAAATCGGAATACAAGGATCCTTAGAACAGAGCATAGGTGAGACTGGAT 1063
|||| ||||||||||| |||||| |||||||| | |||||||| | |||||| | |||||
Sbjct 1895 ACGCATTACTGAAAATGGGAATAAAAGGATCCATCGAACAGAGTACAGGTGATAATGGAT 1954
Query 1064 CAGACGACAACAGTATAATCCATATAGCAAATCCTAGCAGTGGCCTGATAGAGGTCTCAG 1123
|||| ||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 1955 CAGAAGACAAGAGTATAATCCATATAGAAAATCCTAACAGTGGCCTGATAGAGTTCTCAG 2014
Query 1124 AGATGGGTACTGCTATTATAACAGACGATGAGAATGTAGGCTCTCAGGTCCTTC-AGGCG 1182
|||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||
Sbjct 2015 AGATGGGTACTGCTATTATAACAGGCGATGAGAATGTAGTCTCTCAGGTC-TTCCAGGCG 2073
Query 1183 ATTGATGGAATTCTTGACG 1201
||||||||| |||||||||
Sbjct 2074 ATTGATGGAGTTCTTGACG 2092
> AT3G06610.1 | Symbols: | DNA-binding enhancer protein-related
| chr3:2060737-2062067 FORWARD LENGTH=670
Length=670
Score = 163 bits (88), Expect = 4e-39
Identities = 90/91 (99%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 1269 CCGATTGAACACGAGAGGAATCGAGCTGGCGATCCTCGACACGATCGGTGAGCTTGTCGA 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CCGATTGAACACGAGAGGAATCGAGCTGGCGATCCTCGACACGATCGGTGAGCTTGTCGA 174
Query 1329 AAGCTTTGCTATGTTGCTGCAAGTCCTTTGA 1359
|||||||||| ||||||||||||||||||||
Sbjct 173 AAGCTTTGCTTTGTTGCTGCAAGTCCTTTGA 143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66917326485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5