BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359767
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45540.2 | Symbols: | WD-40 repeat family protein / beige-r... 3557 0.0
AT3G60920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beige/BEA... 948 0.0
> AT2G45540.2 | Symbols: | WD-40 repeat family protein / beige-related
| chr2:18757522-18772831 REVERSE LENGTH=9617
Length=9617
Score = 3557 bits (1926), Expect = 0.0
Identities = 2050/2111 (97%), Gaps = 3/2111 (0%)
Strand=Plus/Plus
Query 1 ATGGGCAAGCCTGAGAGCTTAGACAAACTAAAGAATGTTGTTA-GTGGTATTGAGAATTT 59
||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 766 ATGGGGAAGCCTGAAAGCTTAGACAAACTAAAGAATGTTG-TATGTGGTATTGAGAATTT 824
Query 60 TGGCTGTGGAGAGGAGTCAGAGGCCACTGCTTTTCTTGTTATTGATTCACTTATTGCCAC 119
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 825 TGGCTGTGGAGAGGAGTCAGAGGCCACTGCTTTCCTTGTTGTTGATTCACTTATTGCCAC 884
Query 120 CATGGGTGGAGTCGAGAGTTTTGAAGAGGATGAAGATAGCAACCCTCCTAGTGTCATGTT 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CATGGGTGGAGTTGAGAGTTTTGAAGAGGATGAAGATAGCAACCCTCCTAGTGTCATGTT 944
Query 180 AAATTCCCGTGCTGCTATTGTTTCTGGTGAGCTTATTCCCTGGCTTCCTGGTTTAGGTGA 239
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 945 AAATTCCCGTGCTGCTATTGTTTCTGGGGAGCTTATTCCTTGGCTTCCTGGTTTAGGTGA 1004
Query 240 TAGCGTTAAGTTTATGTCCCCGAGGACTCGTATGGTTCGGGGTTTGCTTGTTATTATACG 299
|| ||| || ||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 1005 TAACGTAAATTTTATGTCCCCCAGGACTCGCATGGTTCGGGGTTTGCTTGTTATTTTACG 1064
Query 300 GTCATGCACGAGAAATAGAGCTATGTGTTCAACGGCAGGGTTATTAGGAGTTCTGTTGCG 359
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1065 GTCATGCACGAGAAATAGAGCTATGTGTTCCACGGCAGGGTTATTAGGAGTTTTGTTGCG 1124
Query 360 ATCAGTGGAAGAGATAATTTCCAAGGACGTTGATATGAAATGGAATGCTGCTGCTATTTT 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 ATCAGTGGAAGCGATAATTTCCAAGGACGTTGATATGAAATGGAATGCTGCTGCTATTTT 1184
Query 420 GCTACTATGTATTCAACATTTAGCTGGGCACTCCCTTAGTGTCGATGATTTACACAGGTG 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1185 GCTACTATGTATTCAACATTTAGCCGGGCACTCCCTTAGTGTCGATGATTTACACAGGTG 1244
Query 480 GCTTCAAGTTATAAAAGCCGCAGTTACAACAGCGTGGTCAAGTCCATTGATGCTTGCTTT 539
|||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 1245 GCTTCAAGTTATAAAAGCCGCAATTACAACAGCCTGGTCAAGTCCGTTGATGCTTGCTTT 1304
Query 540 GGAGAAGGCAATGAGTGGAAAGGAATCAAGGGGACCTGCTTGTACTTTTGAATTTGATGG 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1305 GGAGAAGGCAATGAGTGGAAAGGAATCAAGGGGGCCTGCTTGTACTTTTGAATTTGATGG 1364
Query 600 TGAAAGCTCTGGCTTACTTGGTCCCGGAGAAAGTCGTTGGCCCTTTACCAATGGCTATGC 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1365 TGAAAGCTCTGGGTTACTTGGTCCCGGAGAAAGTCGTTGGCCCTTTACCAATGGCTACGC 1424
Query 660 ATTTGCAACATGGATCTATATTGAATCATTTGCTGACACATTAAATGCTGCAACTGCGGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 ATTTGCAACATGGATCTATATTGAATCATTTGCTGACACATTAAATGCTGCAACTGCGGC 1484
Query 720 AGCTGCAATTGCTGCTGCCGCAGCAGCCAAGTCAGGGAAAACATCCGCAATGTCAGCTGC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 AGCTGCAATTGCTGCTGCCGCAGCAGCCAAGTCAGGGAAAACATCCGCAATGTCAGCTGC 1544
Query 780 AGCGGCTGCAAGTGCGCTTGCTGGTGAGGGCACTGCTCATATGCCACGTTTATTCAGCTT 839
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1545 AGCGGCTGCGAGTGCGCTTGCTGGTGAAGGCACTGCTCATATGCCACGTTTGTTCAGCTT 1604
Query 840 TTTGTCCGCTGATAATCAGGGAATAGAAGCATATTTCCATGCTCAATTTCTGGTGGTTGA 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1605 TTTGTCCGCTGATAATCAGGGAATAGAAGCATATTTCCACGCTCAATTTCTGGTGGTTGA 1664
Query 900 GAGTGGTAGTGGGAAAGCAAGAAAGTCTTCGCTGCATTTTACTCATGCATTTAAGCCTCA 959
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GAGTGGTAGTGGGAAAGGAAGAAAGTCTTCGCTGCATTTTACTCATGCATTTAAGCCTCA 1724
Query 960 ATGTTGGTATTTTATTGGTCTCGAGCATAGCTGCAAGCAGGGACTTCTGGGGAAAGCAGA 1019
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1725 ATGTTGGTATTTTATTGGTCTTGAGCATAGCTGCAAGCAAGGACTTCTGGGGAAAGCAGA 1784
Query 1020 GAGTGAACTACGGCTATATATTGATGGATCCTTGTACGAAAGTCGTCCTTTTGATTTTCC 1079
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1785 GAGTGAACTACGATTATATATTGATGGATCCTTGTATGAAAGTCGTCCTTTTGATTTTCC 1844
Query 1080 TCGTATATCCAAGCCTCTCTCTTTCTGTTGCATTGGCACAAATCCTCCTCCTACTATGGC 1139
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 TCGTATATCCAAGCCCCTTTCTTTCTGTTGCATTGGCACAAATCCTCCTCCTACTATGGC 1904
Query 1140 TGGTCTACAACGTCGCCGTCGTCAATGTCCTTTGTTTGCAGAAATGGGACCAGTTTATAT 1199
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1905 TGGTCTACAACGTCGCCGTCGTCAATGTCCTTTGTTTGCAGAGATGGGACCAGTTTATAT 1964
Query 1200 ATTTAAGGAACCAATTGGTCCTGAGAGAATGGCGCGTTTGGCTTCTAGAGGTGGGGATGT 1259
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1965 ATTTAAGGAACCGATTGGTCCTGAGAGAATGGCGCGTTTGGCGTCTAGAGGTGGAGATGT 2024
Query 1260 TTTGCCTTGTTTTGGCAATGGGGCAGGCCTTCCTTGGTTAGCTACAAATGACTATGTACG 1319
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2025 TTTGCCTTGTTTTGGCAATGGGGCAGGCCTTCCTTGGCTAGCTACAAATGACTATGTACG 2084
Query 1320 TAATAAGGCAGAGGAAAGTAGCATTTTGGATGCAGATATTGGAGGATATACCCACCTGCT 1379
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2085 TAATAAGGCAGAAGAAAGTAGTATTTTGGATGCAGATATTGGAGGATATACCCACCTGCT 2144
Query 1380 TTACCACCCTTGTCTTCTAAGTGGGCGATTTTGTCCAGATGCTTCGCTTTCTGGAGCAGC 1439
||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2145 TTACCACCCTTGTCTGCTAAGTGGGAGATTTTGTCCAGATGCTTCACTTTCTGGAGCAGC 2204
Query 1440 AGGCACTCTAAGGCGACCAGCTGAGGTCCTTGGACAAGTCCATGTTGCAACGAGAATGAA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 AGGCACTCTAAGGCGACCAGCTGAGGTCCTTGGACAAGTCCATGTTGCAACGAGAATGAA 2264
Query 1500 GCCAGTGGAGTCTTTCTGGGCCTTAGCTTATGGAGGACCCATGTCCCTGCTTCCTTTGAC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2265 GCCAGTGGAGTCTTTCTGGGCCTTAGCTTATGGAGGACCCATGTCCCTGCTTCCTTTGAC 2324
Query 1560 TGTAAGCAATGTGCATAAAGATAGCTTGGAGCCATGTCTTGGAAATCTTCCACTGTCTTT 1619
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2325 CGTAAGCAGTGTGCATAAAGATAGCTTGGAGCCATGTCTTGGAAATCTTCCACTGTCTTT 2384
Query 1620 GTCCACAGTTACACTTGCTGCACCTGTATTTAGAATTATGTCAGTCGCTATTCAACATCC 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 GTCCACAGTTACACTTGCTGCACCTGTATTTAGAATTATGTCAGTCGCTATTCAACATCC 2444
Query 1680 TGGGAACAATGAAGAGTTGTGTCGTACTCAGGGACCCGAGATTCTTGCTAGAATTCTGAG 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 TGGGAACAATGAAGAGTTGTGTCGTACTCAGGGACCCGAGATTCTTGCTAGAATTCTGAG 2504
Query 1740 ATATCTTCTACACTCACTTGCATCCCTTGACAGGAAGCATGACGGAGTAGGAGAAGAGGA 1799
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2505 TTATCTTCTACACTCACTTGCATCCCTTGACAGGAAGCATGATGGAGTAGGAGAAGAGGA 2564
Query 1800 ACTAGTTGCTGCCATTGTTTCGCTTTGCCAATCACAGAAGATCAATCATGTTCTCAAAGT 1859
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2565 GCTAGTTGCTGCCATTGTTTCGCTTTGCCAATCTCAGAAGATCAATCATGTTCTCAAAGT 2624
Query 1860 GCAGCTCTTCCGTACACTTTTATTAGATTTGAAAATATGGAGCCTGTGCAATTATGGACT 1919
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2625 GCAGCTCTTTCGTACGCTTTTATTAGATTTGAAAATATGGAGCCTGTGCAATTATGGACT 2684
Query 1920 CCAAAAGAAGCTATTGTCTTCCCTTCAAGATATGGTTTTCACTGAAGCAACAGCTATGAG 1979
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2685 CCAAAAGAAGCTATTGTCATCCCTTCAAGATATGGTTTTCACTGAAGCAACAGCTATGAG 2744
Query 1980 GAATGCCGAAGCTATTCAGCTGCTTCTAGATGGCTGTCGAAGATGCTATTGGATGATTTC 2039
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2745 GGATGCCGAAGCTATTCAGTTGCTTCTAGATGGCTGTCGAAGATGCTATTGGATGATTTC 2804
Query 2040 TGAGAAGGATTCTGAGACCACTTTTCCTCTTGATCGGAATACGCGTCAAATGGGGGA-CT 2098
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 2805 TGAGAAGGATTCTGAGACCACTTTTCCTCTTGATGGGAATACGCGTCAAATGGGGGAACT 2864
Query 2099 CACTGCTCTGA 2109
|| ||||||||
Sbjct 2865 CAATGCTCTGA 2875
> AT3G60920.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Beige/BEACH
(InterPro:IPR000409); BEST Arabidopsis thaliana protein
match is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.1);
Has 1795 Blast hits to 1563 proteins in 214 species:
Archae - 2; Bacteria - 29; Metazoa - 830; Fungi - 160;
Plants - 230; Viruses - 0; Other Eukaryotes - 544 (source:
NCBI BLink). | chr3:22503328-22513031 REVERSE LENGTH=5826
Length=5826
Score = 948 bits (513), Expect = 0.0
Identities = 772/897 (86%), Gaps = 17/897 (2%)
Strand=Plus/Plus
Query 550 ATGAGTGGAAAGGAATCAAGGGGACCTGCTTGTA-CTTTTGAATTTGATGGTGAAAGCTC 608
|||| ||||||||||||||| |||||||| |||| | ||||| |||| ||||||||||||
Sbjct 1 ATGAATGGAAAGGAATCAAGAGGACCTGCGTGTAGC-TTTGAGTTTGTTGGTGAAAGCTC 59
Query 609 TGGCTTACTTGGTCCCGGAGAAAGTCGTTGGCCCTTTACCAATGGCTATGCATTTGCAAC 668
|| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 60 AGGTTTACTTGGTCCAGGAGAAAGTCGCTGGCCTTTTACCAATGGCTATGCATTTGCGAC 119
Query 669 ATGGATCTATATTGAATCATTTGCTGACACATTAAATGCTGCAACTGCGGCAGCTGCAAT 728
||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 120 TTGGATTTATATTGAATCATTTGCTGACACATTAGATGCTTCAACCGCGGCAGCTGCAAT 179
Query 729 TGCTGCTGCCGCAGCAGCCAAGTCAGGGAAAACATCCGCAATGTCAGCTGCAGCGGCTGC 788
||||||||| |||| || || ||||| |||| || | |||| |||| || | || |
Sbjct 180 TGCTGCTGCTTCAGCGGCAAAATCAGGAAAAATAT-C-TAATG-CAGC-GC--CTGC-G- 231
Query 789 AAGTGCGCTTGCTGGTGAGGGCACTGCTCATATGCCACGTTTATTCAGCTTTTTGTCCGC 848
|| || | |||||||||| |||||||||||||| ||| | |||||||||||| || |
Sbjct 232 AA-TGTACACACTGGTGAGGGTACTGCTCATATGCCTCGTCTGTTCAGCTTTTTGACCCC 290
Query 849 TGATAATCAGGGAATAGAAGCATATTTCCATGCTCAATTTCTGGTGGTTGAGAGTGGTAG 908
||||||||||||||| ||||| |||||| |||| |||||| |||||||||||||||| ||
Sbjct 291 TGATAATCAGGGAATTGAAGCTTATTTCTATGCACAATTTTTGGTGGTTGAGAGTGGCAG 350
Query 909 TGGGAAAGCAAG-AAAGTCTTCGCTGCATTTTACTCATGCATTTAAGCCTCAATGTTGGT 967
|||||||| ||| ||| |||| || ||||| |||||||||||||||||||| |||||||
Sbjct 351 TGGGAAAGGAAGTAAA-ACTTCACTTCATTTCACTCATGCATTTAAGCCTCAGTGTTGGT 409
Query 968 ATTTTATTGGTCTCGAGCATAGCTGCAAGCAGGGACTTCTGGGGAAAGCAGAGAGTGAAC 1027
| |||||||| || ||||||| |||||| ||||||||| | ||||| |||| ||||||
Sbjct 410 ACTTTATTGGCCTTGAGCATACCTGCAATCAGGGACTTTTAGGGAATTCAGATAGTGAAT 469
Query 1028 TACGGCTATATATTGATGGATCCTTGTACGAAAGTCGTCCTTTTGATTTTCCTCGTATAT 1087
|||||||||||||||| || || ||||| |||| ||| || ||||| | |||||| ||||
Sbjct 470 TACGGCTATATATTGACGGGTCGTTGTATGAAACTCGACCATTTGACTATCCTCGGATAT 529
Query 1088 CCAAGCCTCTCTCTTTCTGTTGCATTGGCACAAATCCTCCTCCTACTA-TGGCTGGTCTA 1146
|||| || || ||||||||||||||||| ||||||||||| |||| | | |||||||||
Sbjct 530 CCAAACCGCTTTCTTTCTGTTGCATTGGGTCAAATCCTCCTTCTACAACT-GCTGGTCTA 588
Query 1147 CAACGTCGCCGTCGTCAATGTCCTTTGTTTGCAGAAATGGGACCAGTTTATATATTTAAG 1206
|||||||| || ||||| ||| |||||||||| || |||||||||||||||||||||||
Sbjct 589 CAACGTCGTCGACGTCAGTGTGCTTTGTTTGCTGAGATGGGACCAGTTTATATATTTAAA 648
Query 1207 GAACCAATTGGTCCTGAGAGAATGGCGCGTTTGGCTTCTAGAGGTGGGGATGTTTTGCCT 1266
||||| ||||||||||| |||||| | || ||||| |||||||||||||||||||||||
Sbjct 649 GAACCGATTGGTCCTGAAAGAATGACACGATTGGCAACTAGAGGTGGGGATGTTTTGCCT 708
Query 1267 TGTTTTGGCAATGGGGCAGGCCTTCCTTGGTTAGCTACAAATGACTATGTACGTAATAAG 1326
|||||||||||||||||||| ||||| |||||||||||||||||| |||| |||||| |
Sbjct 709 TGTTTTGGCAATGGGGCAGGTCTTCCATGGTTAGCTACAAATGACCATGTCCGTAATGTG 768
Query 1327 GCAGAGGAAAGTAG-CATTTTGGATGCAGATATTGGAGGATATACCCACCTGCTTTACCA 1385
|||||||||||||| | ||| ||||||||| |||||||||| | ||||| ||||||||
Sbjct 769 GCAGAGGAAAGTAGTC-TTTCGGATGCAGAGCTTGGAGGATACATTCACCTACTTTACCA 827
Query 1386 CCCTTGTCTTCTAAGTGGGCGATTTTGTCCAGATGCTTCGCTTTCTGGAGCAGCAGG 1442
||| ||||| ||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 828 CCCATGTCTACTAAGTGGGCGGTTCTGTCCAGATGCTTCTCTTTCTGGAGCAGCAGG 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104567735235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5