BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359773

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17205.1 | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3...   843    0.0  


> AT3G17205.1 | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873294-5881525 
FORWARD LENGTH=3717
Length=3717

 Score =  843 bits (456),  Expect = 0.0
 Identities = 484/497 (97%), Gaps = 4/497 (1%)
 Strand=Plus/Plus

Query  1    ATGGCCATTGAGCGCTCGAAGGTGCGGCATGATTTCTGTGAAACCTATGGGAATAATTGC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  ATGGCCATTGAGCGCTCGAAGGTGCGGCATGATTTCTGTGAAACCTATGGGAATAATTGC  477

Query  61   CAGAATGTCGATAGACATTGCTTTGAGCCAGGCTCAAGTTTCCTCCGGCAGTTTCTGttt  120
            |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  478  CAGAATGTTGATAGACATTGCTTTGAGCCAGGTTCAAGTTTCCTCCGGCAGTTTCTGTTT  537

Query  121  tttttCAAGGCACAAAACTCGGGAGATTTTTTGATACTTGTGGAGACTTGTCGTCTACTG  180
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  538  TTTTTCAAGGCACAAAACTCGGGAGATTTTGTGATACTTGTGGAGACTTGTCGTCTACTG  597

Query  181  CAGAGTTTCGTTGACAGCAGTGGTGACATTGTCAGCCTTTTTTCTGGCTTGGACTATTCC  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  598  CAGAGTTTCGTTGACAGCAGTGGTGACATTGTCAGCCTTTTTTCTGGCTTGGACTATT-C  656

Query  241  TT-TAAGCATAATTTGGTGGATTTTAGAGTAAAGAAACTTGCATTTACCTGTATCGAAGC  299
            || | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  657  TTCTGAGCATAATTTGGTGGATTTTAGAGTAAAGAAACTTGCATTTACCTGTATCGAGGC  716

Query  300  TATACACCAGAATAGGAACCGTTTAAGGGATCAGCTCTTAGTTACTCCTGAAGAAGCTAG  359
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  717  GATACACCAGAATAGGAACCGTTTAAGGGATCAGCTCTTAGTTACTCCTGAAGAAGCTAG  776

Query  360  CATTTCAACAGCTATCTTGATGGAGGCAGTGTCGTTGTTGCTAGATCCTAAGCTGCCTTG  419
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  777  CATTTCAACAGCTATCTTGATGGAGGCAGTTTCGTTGTTGCTAGATCCTAAGCTGCCTTG  836

Query  420  GGTCTGCAAAATAGTTAGTTATCTACATAAA-GAGAACGTATTCAAACTGGTCCGAGAAA  478
            ||||||||||||||||||||||||||| ||| || || ||||||||||||||||||||||
Sbjct  837  GGTCTGCAAAATAGTTAGTTATCTACAAAAAAGAAAA-GTATTCAAACTGGTCCGAGAAA  895

Query  479  TGGTCACTACGGCTAAG  495
            |||||||||||||||||
Sbjct  896  TGGTCACTACGGCTAAG  912



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5