BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359775
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52030.2 | Symbols: | TraB family protein | chr5:21128129-2... 503 1e-141
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like... 265 5e-70
> AT5G52030.2 | Symbols: | TraB family protein | chr5:21128129-21130090
FORWARD LENGTH=1427
Length=1427
Score = 503 bits (272), Expect = 1e-141
Identities = 350/386 (91%), Gaps = 12/386 (3%)
Strand=Plus/Plus
Query 1 TTCCCTTTCTTCACTCCCTTA-ACTTCAAAACCT-TTCTTCAAACCCATCAAAGTCTCCG 58
|||||||||||||||||| || |||||||| | | || |||| |||||||||| |
Sbjct 196 TTCCCTTTCTTCACTCCC-TATACTTCAAAGCATATT-TTCAGACCCATCAAA------G 247
Query 59 TCTCCGTCTCCGTTCAAACTCCTCCGCCGGACTTCGATTTCCGAAACGAAATCGCGTCGG 118
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 248 TCTCCGTCTCCGTTCAAACTCCTCCGCCGGATTTCGATTTCCGCAACGACATCGCGTCGG 307
Query 119 ACTCACGCGCTGCAATCGCAAAAACTTTTCCGGAGTTGCTTGACCTCGCCGATAACGGGA 178
| |||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 308 AATCACGCGCCGCAATCGCGAAAACTTACCCGGAGTTGCTTGACCTCGCTGATAACGGGA 367
Query 179 CTTTGATTCTTGTCCAGAAACAGAGTTTTGGTCCTGTTCCAGCTTGGCGCAAAGAGTTCG 238
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 368 CTCTGATTCTTCTCCAGAAACAGAGTTTCGGTCCTGTTCCAGCTTGGCGCAAAGAGTTCG 427
Query 239 TTGAGCCGGA-GTCGATTTGGCTTGTGGGTACTTCTCATATCTCGTCGGAGTCTGCTTCC 297
|||||||||| | |||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 428 TTGAGCCGGAAG-CGATTTGGCTTGTGGGCACTTCTCATATCTCGCCGGAATCTGCTTCC 486
Query 298 GTCGTTGAACGTGTCGTCCGTACTGTGAAACCTGATAATGTCGCCGTCGAGCTCTGTCGT 357
|||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 487 ATCGTTGAACGCGTCGTCCGTACTGTGAAGCCTGATAATGTCGCCGTTGAACTCTGTCGT 546
Query 358 AGCAGGAAAGTCCATTTCTTTATCCA 383
|||||||||||||| |||||||||||
Sbjct 547 AGCAGGAAAGTCCAATTCTTTATCCA 572
> AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like
1 | chr1:18098095-18101623 FORWARD LENGTH=1966
Length=1966
Score = 265 bits (143), Expect = 5e-70
Identities = 191/214 (89%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 435 GGCCAAGGCTGAGAGTTCGTCTGAAGATGATTCATCTTCTGAAGAAGAACCTTCAAAGAA 494
||||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 544 GGCCAAGAAAGAGAGTTCGTCTGAAGATGATTCATCTTCTGAAGACGAACCTGCGAAGAA 603
Query 495 ACCAGCTGCTAAGAGTGCCAAGGCAGCTGCCAAAGG-TTCTTCTTTCTCTGATGA-GTAC 552
||| |||||||||| ||||||| ||||||| || || |||||| | ||||||||| | ||
Sbjct 604 ACCTGCTGCTAAGATTGCCAAGCCAGCTGCTAA-GGATTCTTCATCCTCTGATGATG-AC 661
Query 553 TCAGATGATGATTCTGAGGATGAGAAGCCTGCTACCAAGAAGGCAGCTCGTGCTGCTACC 612
|||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 662 TCAGATGAGGATTCCGAGGATGAGAAACCTGCTACCAAGAAGGCAGCTCCTGCTGCTGCC 721
Query 613 AAGGCTGCAAGCATCTCAGATGCATCAGATGAAG 646
||||||||||||| ||||||| ||||||||||||
Sbjct 722 AAGGCTGCAAGCAGCTCAGATTCATCAGATGAAG 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5