BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359776
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37670.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1423 0.0
AT5G02430.1 | Symbols: | Transducin/WD40 repeat-like superfami... 296 3e-79
> AT2G37670.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:15797384-15800536 REVERSE LENGTH=2712
Length=2712
Score = 1423 bits (770), Expect = 0.0
Identities = 836/869 (96%), Gaps = 0/869 (0%)
Strand=Plus/Plus
Query 1 ATGGATCTTCGGAAGTTTAATTCGTATCTTTCGAAAAGCGTGAGGTTGAGTAAGAGAAGA 60
||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 937 ATGGATCTTCGCAAGTTTAATTCGTATCTTTCCAAGAGTGTGAGGTTAAGTAAGAGAAGA 996
Query 61 GGAGCTGCATTGTTGAAGAACATTAAGGGTGTAGCTCATTCCATGAGTTTACGGGTTGCG 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 997 GGAGCTGCATTGTTGAAGAACATTAAAGGTGTAGCTCATTCCATGAGTTTACGCGTTGCG 1056
Query 121 GATAAAGATGTAAGCGATGGAAGCACCGATAGTCCGAAAAAGGGGAAAGATCATAAGCAT 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1057 GATAAAGATGTAAGCGATGGAAGCACTGATAGTCCGAAAAAGGGGAAAGATCATAAACAT 1116
Query 181 GGTAAAGCTAATGAGTGGGTGAAAGTTAGACCAACAGGGAAATCTTACAAGGAATTAAGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1117 GGTAAAGCTAATGAGTGGGTGAAAGTTAGACCAACAGGGAAATCTTACAAGGAGTTAAGT 1176
Query 241 GCTTTGCATATGTGTCAAGAGATTCAAGCTCACGAGGGTGCGGTTTGGACTATTAAGTTT 300
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1177 GCTTTACATATGTGTCAAGAGATTCAAGCTCATGAGGGTGCGGTTTGGACTATCAAGTTT 1236
Query 301 AGTCAAGATGCTCATTATCTAGCGAGCGGAGGAGCGGATAGAGTCATTCATGTATGGGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1237 AGTCAAGATGCTCATTATCTAGCGAGCGGAGGAGCGGATAGAGTCATTCATGTGTGGGAG 1296
Query 361 GTTCAAGAATGTGAACTAATGTCTATGAATGAAGGGAGTCTCACTCCTATTCATCCTTCA 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1297 GTTCAAGAATGTGAACTAATGTCTATGAATGAAGGAAGTCTCACTCCTATTCATCCTTCA 1356
Query 421 CTTTGTGACTCTGCTGGAAATGAGATAACTGTGGTAGAGAAGAAAAGGAAAGGAAAAGGC 480
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1357 CTTTGTGACTCTTCTGGAAATGAGATAACTGTGGTAGAGAAGAAAAAGAAAGGAAAGGGA 1416
Query 481 TCATCGGGGAGGCGAAACAATCATATTCCGGATTACGTACATGTTCCTGAAACCGTCTTC 540
||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1417 TCATCCGGGAGACGACACAATCATATTCCGGATTACGTACATGTTCCTGAAACAGTCTTC 1476
Query 541 TCCTTTTCTGATAAGCCTGTTTGCTCTTTGAAAGGTCATTTGGATGCTATTTTGGATCTG 600
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1477 TCGTTTTCTGATAAGCCTGTTTGCTCTTTGAAAGGTCATCTGGATGCTATTTTGGATCTT 1536
Query 601 TCATGGTCCAAATCTCAGCTTCTTCTTTCATCTTCCATGGACAAAACAGTCAGGTTATGG 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1537 TCATGGTCCAAATCTCAGCTTCTTCTTTCATCTTCTATGGACAAAACAGTCAGGTTATGG 1596
Query 661 GATCTAGAAACCAAAACATGTCTCAAACTGTTTGCCCATAATGACTATGTGACATGTATC 720
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 GATATAGAAACCAAAACATGTCTCAAACTGTTTGCCCATAATGACTATGTGACATGTATT 1656
Query 721 CAGTTTAGCCCAGTGGATGAAAATTATTTCTTAAGTGGTTCACTTGACGCTAAGATAAGG 780
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1657 CAGTTCAGTCCAGTGGATGAAAATTATTTCTTAAGTGGTTCACTTGACGCTAAAATAAGG 1716
Query 781 ATATGGAGCATACAAGATCGACATGTTGTGGAATGGAGTGATCTTCATGAAATGGTTACT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 ATATGGAGCATACAAGATCGACATGTTGTGGAATGGAGTGATCTTCATGAAATGGTTACT 1776
Query 841 GCTGCTTGCTACACTCCAGACGGTCAGGG 869
|||||||||||||| ||||||||||||||
Sbjct 1777 GCTGCTTGCTACACACCAGACGGTCAGGG 1805
Score = 560 bits (303), Expect = 1e-158
Identities = 326/337 (97%), Gaps = 1/337 (0%)
Strand=Plus/Plus
Query 864 TCAGGGGTTACCTCCAATGCCTAAGAAAGCCGCTACGAAGAGTCAGATTCAACCAGAGGA 923
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2377 TCA-GGGTTACCTCCAATGCCTAAGAAAGCCGCTACAAAGAGTCAGATTCAACCAGAGGA 2435
Query 924 AGAGACAGGACCGGAGCTGGGAAGCAGTGAGTCGTTTCGGTTGAGTATGAACGGTTCGGA 983
|||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 2436 AGAGGCAGGACCGGAGCTGGGAAGCAGTGAGTCGTTTCGGTCGAGTATGAACTCTTCGGA 2495
Query 984 GCAGCATTCATCGAGGTTTGGGGAATCGCCATCGATAAACACATCGTCAAGGTTATCTTC 1043
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2496 GCAGCATTCATCGAGGTTTGGGGAATCTCCATCGATAAACACATCGTCAAGGTTATCTTC 2555
Query 1044 ATGGTCGTGGTTCGACAGTGGAGGCCATGGTCCGCAAACTATACAGCCAACGGCTTGGGG 1103
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2556 TTGGTCATGGTTCGACAGTGGAGGGCATGGTCCGCAAACTATACAGCCAACGGCTTGGGG 2615
Query 1104 GATGGTGATTGTGACGGCTACAGTTCATGGTGAGATCCGATCTTATCAAAATTTTGGTTT 1163
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2616 GATGGTGATTGTGACGGCTACAGTTCATGGTGAGATCCGATCTTATCAAAACTTTGGTTT 2675
Query 1164 ACCGAGAAGAATCGGTCGCCAAACTACTCTGTTTTGA 1200
|||||||||||||||||||||||||||||||||||||
Sbjct 2676 ACCGAGAAGAATCGGTCGCCAAACTACTCTGTTTTGA 2712
> AT5G02430.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:526592-529839 FORWARD LENGTH=2718
Length=2718
Score = 296 bits (160), Expect = 3e-79
Identities = 684/924 (74%), Gaps = 88/924 (10%)
Strand=Plus/Plus
Query 1 ATGGATCTTCGGAAGTTTAATTCGTATCTTTCGAAA-AGCGTGAG-GTTGAGTAAG-AGA 57
|||||| || |||| ||||| |||||| | || ||| || |||| | | |||||| ||
Sbjct 952 ATGGATTTTAGGAAATTTAACTCGTATGTGTC-AAAGAGTTTGAGAG-TAAGTAAGAAG- 1008
Query 58 AGAGGAGCTGCATTGTTGAAGAACATTAAGGGTGTAGCTCATTCCATGAG---TT-TACG 113
||||||||||| ||||| |||||||| |||| || |||||||| ||||| || ||
Sbjct 1009 AGAGGAGCTGCTTTGTTAAAGAACATAAAGGACGTTGCTCATTCTATGAGCTCTTCTA-A 1067
Query 114 GGTTGC-G-GATAA-AGATGTAAGCGA-TGG-A--AGCACCGA-TAGTCCGAAAA--AGG 163
|||| | | || || ||| | | | | ||| | ||| | | |||||| |||| ||
Sbjct 1068 GGTTTCAGAGA-AAGAGAAGGATTCAACTGGTAGTGGCA-CAAGTAGTCC-AAAAGTAGC 1124
Query 164 GGA-AAGATC-ATAAGCATGGTAAAGCTAATGAGTGGGTGAAAGTTAGACCA-ACAGGGA 220
||| |||| | || |||| | || ||| | ||||||||||| || || ||||||
Sbjct 1125 GGAGAAGAACAATGAGCA--G----GCGAATCAATGGGTGAAAGTGAG-GCATTCAGGGA 1177
Query 221 AATCTTACAAGGAATTAAGTGCTTTGCATATGTGTCAAGAGATTCAAGCTCA-CGAGG-G 278
| ||| | || || |||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 1178 AGTCTCATAAAGATTTAAGTGCTTTGCATATGTGTCAAGAGATTCAAGCTCATCAAGGAG 1237
Query 279 TGCGGTTTGGACTATTAAGTTTAGTCAAGATGCTCATT-ATCTAGCGAGCGGAGGAGCGG 337
| |||||||||| || ||||||| |||| | |||| || |||| || | ||| | ||
Sbjct 1238 -GTA-TTTGGACTATGAAATTTAGTCCAGATTCACATTTAT-TAGCAAGTGCAGGGGAGG 1294
Query 338 ATAGAGTCATTC-ATGTATGGGAGGTTCAAGAATGTGAACTAATGTCTATGAATGAAGGG 396
|| | | || || |||| ||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 1295 ATTGTG-CAATCCATGTGTGGGAGGTTCAAGAATGTGAAATCATGTCAATGAATGAAGGG 1353
Query 397 AGTCTC-ACTCCTATTCATCCTTCACT-T-TG-TG--AC---TC--T-G-CTGGAAA-TG 442
|| || || ||||||||||||||| | | || | || | | | | |||| ||
Sbjct 1354 AG-CTTGACACCTATTCATCCTTCAATGTCTGGTTCCACAGATAAATCGTC-GGAAGGTG 1411
Query 443 A-GAT--A-AC-TGTGGTA-GAGAAGAA-AAGGAAAGG-AAAAGGCTCATCGGGGAGGCG 494
| | | | | ||| | || ||||| ||| ||||| |||| || || |||
Sbjct 1412 ATGCTGCAGAAGTGTCACAAGATAAGAAGAAG-AAAGGGAAAA--CT--TCAATGAGTAA 1466
Query 495 AAAC--AATC-ATATTCCGGATTACGTACATGTTCCTGAAACCGTCTTCTCCTTTTCTGA 551
||| || | | || || ||||| || || | |||||||| || |||||||| || ||
Sbjct 1467 AAAAGGAAACCAGATACCAGATTATGTCCACGCGCCTGAAACTGTGTTCTCCTTGTCAGA 1526
Query 552 TAAGCCTGTTTGCTCTTTGAAAGGTCATTTGGATGCTATTTTGGATCTG-TCATGGTC-C 609
||| || |||||||||| | ||||| ||||||| | || |||| || || ||||| |
Sbjct 1527 TAAACCAATTTGCTCTTTCACTGGTCACTTGGATGATGTTCTGGA-CTTATCTTGGTCTC 1585
Query 610 AAATCTCAGCTTCTT-CTTTCATCTTCCATGGACAAAACAGT-CAGGTTATGGGATCTAG 667
|| ||||| || ||||||||||||||||||||||| || | |||| |||||| | |
Sbjct 1586 GG-TCACAGCTA-TTGCTTTCATCTTCCATGGACAAAACTGTGC-GGTTGTGGGATATTG 1642
Query 668 AAAC-CAAAACATGTCTCAAACTGTTTGCCCATAATGACTATGTGACATGTATCCAGTTT 726
|||| |||| ||||| ||||| |||||||| ||||||||||| || ||| | || ||
Sbjct 1643 AAACTCAAAGT-TGTCTAAAACTATTTGCCCACAATGACTATGTTACTTGTGTACAATTC 1701
Query 727 AGCCCAGTGGATGAAAATTATTTC-TTAAGTGGTTCACTTGACGCTAAGATAAGGATATG 785
| ||| |||||||| |||| ||| ||| |||| || ||||| || ||||| | |||||
Sbjct 1702 AATCCATTGGATGAAGATTACTTCATTA-GTGGCTCCCTTGATGCCAAGATCCGTATATG 1760
Query 786 GAGCATA-CAAGATCGACATGTTGTGGAATGGAGTGATCTTCATGAAATGGTTACTGCTG 844
|| |||| ||| | || || || || || |||| |||||| | ||||||||||| || |
Sbjct 1761 GAACATATCAA-ACCGTCAAGTAGTTGAGTGGAATGATCTAAAGGAAATGGTTACCGCGG 1819
Query 845 CTTGCTACACTCCAGACGGTCAGG 868
||| || ||||| || |||||||
Sbjct 1820 TTTGTTATACTCCTGATGGTCAGG 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5