BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359787
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22250.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 1332 0.0
> AT3G22250.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr3:7867753-7870229 FORWARD LENGTH=1615
Length=1615
Score = 1332 bits (721), Expect = 0.0
Identities = 859/925 (93%), Gaps = 11/925 (1%)
Strand=Plus/Plus
Query 3 TGTCCTCGTCAGCTAGAAAAACCAATAGTCCTA-CCAGAGCAACCGCTCCTATCCGCAGA 61
||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||
Sbjct 522 TGTCCTCGTCAACTAGAAAAAACAATAGTCC-AGCCAGAGCAACCGCTCCTATCCGCAGA 580
Query 62 AGATCTACCGTGGCTGATAGGAAGTCCGAAAGCTCAGAAAAAACGATTCAAGTTCTGGCA 121
|||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct 581 AGATCTACCGTGGCTGATCGGAACTCCCAAAGCTCAGAAAAAACGATTCAAGTTCTGGCA 640
Query 122 ACGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATCTTGGCAAACTCCTTTAAAGACGA 181
| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 641 AAGAACTCTAGAACGAACAAAAAGTCTCCGTTGGATCTTGACAAGCTCCTTTAAAGATGA 700
Query 182 ATATGATGATGTCAACAATCACATATCCTCCTACAAAATGTCTAA-GAGTTTCAACAAAG 240
|||||| |||||| |||| |||| | | |||||||||| ||||| || ||| |||||||
Sbjct 701 ATATGAAGATGTCGACAACCACAAAGCATCCTACAAAAAATCTAACGA-TTTAAACAAAG 759
Query 241 AAAACAATGGTCAAAACCCTCAAATCCTTCACTTATTATGCCCATTGCATAACCAAGAAG 300
||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||
Sbjct 760 AAAACAATGGTCAAAACCCTCAAATCCTTCA--T-TTAGGTCCATTGCATAACCAAGAAG 816
Query 301 CAACAAATAATATAGCTATAACCAAGACTAGTTTTTGGGAAGAAGACATATCTTGTCTTG 360
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 817 CAACAAATAATATAACTATAACCAAGACTAGTTTTTGGGAAGAAGACATGTCTTGTCTAG 876
Query 361 GTTGGCTTCAAGAACAAAATCCAAACTCAGTCATTTATATCTCATTTGGAAGTTGGGTTT 420
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 877 GTTGGCTTCAAGAACAAAACCCGAACTCAGTCATTTATATCTCATTTGGAAGTTGGGTTT 936
Query 421 CTCCTATAGGAGAATCAAATATTCAAACGTTGGCATTGGCGATAGAAGCTTCCGGGAGAC 480
||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||
Sbjct 937 CTCCTATAGGAGAATCAAATATTCAAACGTTGGCATTGGCGTTGGAAGCGTCAGGGAGAC 996
Query 481 CTTTTCTTTGGGCGCTAAACCGAGTGTGGCAAGAGGGACTTCCACCAGGGTTCGTGCATA 540
|||| ||||||||| ||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 997 CTTTCCTTTGGGCGTTAAACCGAGTGTGGCAAGAGGGACTACCACCAGGTTTTGTGCATA 1056
Query 541 GAGTCACAATCACCAAAAACCAAGGAAGGATCGTCTCATGGGCTCCGCAACTTGAAGTTC 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GAGTCACAATTACCAAAAACCAAGGAAGGATCGTCTCATGGGCTCCGCAACTTGAAGTTC 1116
Query 601 TTAGAAACGATTCTGTGGGATGTTACGTGACTCATTGTGGTTGGAACTCAACAATGGAGG 660
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 1117 TTAGAAACGATTCTGTGGGATGTTACGTGACTCATTGTGGCTGGAACTCGACTATGGAGG 1176
Query 661 CGGTGGCAAGTTCTAGGAGGCTGCTATGTTATCCGGTGGCTGGAGACCAGTTTGTGAACT 720
| ||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1177 CAGTGGCAAGTTCCCGGAGGCTACTATGTTATCCGGTGGCCGGAGACCAGTTTGTTAACT 1236
Query 721 GTAAATACATCGTAGACGTGTGGAAGATTGGGGTGAGATTGAGCGGGTTTGGAGAGAAAG 780
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 1237 GTAAATACATCGTGGACGTTTGGAAGATTGGAGTGAGATTGAGCGGGTTTGGAGAGAAGG 1296
Query 781 AGGTTGAAGATGGACTAAGGAGAGTAATGGAGGATAAAGATATGGGTGAGAGCTTGGAG- 839
||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||
Sbjct 1297 AGGTTGAAGATGGACTAAGGAAAGTAATGGAGGATCAAGATATGGGTGAGAGATTG-AGG 1355
Query 840 AAGTTAAGAGATAGAGCAATGGGGAATGAAGCTCGTTTGAGTTCGGAAATGAATTTTACA 899
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AAGTTAAGAGACAGAGCAATGGGGAATGAAGCTCGTTTGAGTTCGGAAATGAATTTTACA 1415
Query 900 CTTTTTAAAAAT-GAGATTAAATAG 923
|||||||||| ||| |||| |||
Sbjct 1416 -TTTTTAAAAAACGAGCTTAATTAG 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45110264006
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5