BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg359796

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13120.1 | Symbols:  | Ribosomal protein S10p/S20e family pr...   532    5e-151


> AT3G13120.1 | Symbols:  | Ribosomal protein S10p/S20e family 
protein | chr3:4219775-4221630 REVERSE LENGTH=1027
Length=1027

 Score =  532 bits (288),  Expect = 5e-151
 Identities = 304/312 (97%), Gaps = 0/312 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  369  ATGGCGCCAAAGCAAAAGATTAGGATCAAGCTTAGATCATACTGGGTGCCTCTTATTGAG  428

Query  61   GACTCATGCAAGCAGATTCTTGATGCTGCTAGAAATACTAATGCAAAGACGATGGGTCCT  120
            ||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||
Sbjct  429  GACTCATGCAAGCAGATACTTGATGCTGCGAGAAACACCAATGCAAAGACGATGGGTCCT  488

Query  121  GTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTTAAGTCTCCTCACGTACACAAG  180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  489  GTTCCATTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCTCACGTTCACAAG  548

Query  181  GATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGTATGATTGATATTCTCTACCCG  240
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  549  GATGCTAGGTTCCATTTTGAAATCCGGACACACCAGCGCATGATTGATATTCTCTACCCG  608

Query  241  ACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTTGATGTGGAA  300
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  609  ACTGCTCAAACTATCGATTCTTTGATGCAACTTGATCTTCCTGCTGGTGTCGATGTGGAA  668

Query  301  GTGAAGCTCTGA  312
            ||||||||||||
Sbjct  669  GTGAAGCTCTGA  680



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5