BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359798
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT5G54190.1 | Symbols: PORA | protochlorophyllide oxidoreductas... 1572 0.0
AT4G27440.1 | Symbols: PORB | protochlorophyllide oxidoreductas... 893 0.0
> AT5G54190.1 | Symbols: PORA | protochlorophyllide oxidoreductase
A | chr5:21990999-21992812 REVERSE LENGTH=1441
Length=1441
Score = 1572 bits (851), Expect = 0.0
Identities = 934/975 (96%), Gaps = 2/975 (0%)
Strand=Plus/Plus
Query 35 TGC-AGAGGGAACAAAGCTTGAGGAATAATAAAGCAATTATTCGAGCTCAAGCAATCGCG 93
||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 199 TGCAAGAGGGAACAGAGCTTGAGGAATAATAAAGCGATTATTCGAGCTCAAGCAATCGCG 258
Query 94 ACTTCAACACCATCGGTCACAAAATCGTCCTTAGACCGCAAGAAAACCCTTAGAAAAGGA 153
|||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 259 ACTTCAACTCCATCAGTCACAAAATCTTCCTTAGACCGCAAGAAAACACTTAGAAAAGGA 318
Query 154 AACGTGGTTGTCACGGGAGCTTCTTCAGGGTTAGGGTTAGCAACGGCAAAGGCATTAGCC 213
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 319 AACGTGGTTGTCACGGGAGCTTCTTCAGGGCTAGGTTTAGCAACGGCAAAGGCATTAGCC 378
Query 214 GAGACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCC 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GAGACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCC 438
Query 274 GCTCAATCCGCTGGCATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTAGCGTCT 333
|||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 439 GCTCAATCTGCAGGGATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTGGCGTCT 498
Query 334 TTGGACAGCGTGAGGCAGTTCGTTGATAACTTCAGGCGAGCCGAGATGCCTCTCGATGTG 393
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 499 TTGGACAGCGTGAGGCAGTTTGTTGATAACTTCAGGCGAGCTGAGATGCCTCTCGATGTG 558
Query 394 TTGGTCTGCAATGCTGCGGTTTATCAGCCAACAGCTAATCAACCTACTTTCACTGCTGAA 453
|||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 559 TTGGTCTGCAATGCCGCAGTCTATCAGCCAACGGCTAATCAACCTACTTTCACTGCTGAA 618
Query 454 GGGTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTG 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GGGTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTG 678
Query 514 ATTGATGACTTAAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATA 573
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 ATTGATGACTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATA 738
Query 574 ACCGGAAATACTAATACATTGGCGGGTAATGTACCTCCGAAGGCGAATCTTGGTGATTTG 633
|||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 739 ACCGGAAACACTAATACATTGGCTGGTAATGTACCTCCAAAGGCTAATCTTGGTGATTTG 798
Query 634 AGGGGATTAGCAGGTGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGAT 693
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 AGGGGACTAGCAGGCGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGAT 858
Query 694 TTCGTTGGGGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAAGAG 753
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 859 TTTGTTGGCGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAGGAG 918
Query 754 TATCATAGGCGTTTCCATGAAGACACCGGCATAACTTTTGCTTCCCTGTACCCCGGTTGT 813
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 919 TTTCATAGGCGTTTCCATGAAGACACCGGCATAACTTTTGCTTCCCTTTACCCCGGTTGT 978
Query 814 ATCGCGACAACTGGTTTGTTCAGAGAACATATACCTCTCTTCCGTACCCTCTTCCCTCCT 873
|| || || ||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 979 ATTGCAACGACTGGTTTGTTCAGAGAGCATATTCCTCTTTTCCGTACCCTCTTCCCTCCT 1038
Query 874 TTCCAGAAGTACATCACAAAAGGTTACGTCTCCGAGACAGAGGCTGGGAAAAGACTTGCT 933
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1039 TTCCAGAAGTACATCACAAAAGGTTACGTCTCCGAGTCAGAGGCTGGGAAAAGACTTGCT 1098
Query 934 CAGGTGGTGGGTGACCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAACCAAGAC 993
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1099 CAGGTGGTGGCTGATCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAAC-AAGAC 1157
Query 994 CTCGGCTTCATTTGA 1008
|||||||||||||||
Sbjct 1158 CTCGGCTTCATTTGA 1172
> AT4G27440.1 | Symbols: PORB | protochlorophyllide oxidoreductase
B | chr4:13725546-13727353 FORWARD LENGTH=1554
Length=1554
Score = 893 bits (483), Expect = 0.0
Identities = 821/982 (84%), Gaps = 32/982 (3%)
Strand=Plus/Plus
Query 38 AGAGGGAACAAAGCTTGAGGAATAATAAAGCAATTATTCGAGCTC-AAGCAATCGCGACT 96
|||| ||||| ||||| |||||| | ||| | |||||||| | || | | ||||||
Sbjct 263 AGAGAGAACAGAGCTTAAGGAAT-CT--AGC-A--ATTCGAGCCCAAACCGCT-GCGACT 315
Query 97 TCAACACCAT-CGGTCACAAAATCGTCCTTAGACCGCAAGAAAACCCTT-AGAAAAGGAA 154
|||| || | | || |||||| ||| | ||| ||||||||| | || || |||||||
Sbjct 316 TCAA-GCCCTACAGTTACAAAA---TCCGTGGACGGCAAGAAAA-CGTTGAGGAAAGGAA 370
Query 155 ACGTGGTTGTCACGGGAGCTTCTTCAGGGTTAGGGT-TAGCAACGGC-AAAGGCAT-TAG 211
| ||||| ||||| ||||| || || |||||| ||| |||| ||||| ||| || | |||
Sbjct 371 ATGTGGTGGTCACTGGAGCCTCGTCTGGGTTA-GGTCTAGCCACGGCTAAA-GC-TCTAG 427
Query 212 CCGAGACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAG 271
| |||||||| |||||| |||||||||||||||||||||||||||| || || |||||||
Sbjct 428 CTGAGACAGGGAAATGGAACGTGATAATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAG 487
Query 272 CCGCTCAATCCGCT-GGCATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTAGCG 330
| ||| |||||| | || |||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 488 CTGCTAAATCCG-TAGGGATGCCTAAAGACAGCTACACAGTGATGCATTTAGACTTAGCC 546
Query 331 TCTTTGGACAGCGTGAGGCAGTTCGTTGATAACTTCAGGCGAGCCGAGATGCCTCTCGAT 390
|| |||||||||||||| ||||| |||||||| |||||| || | |||| ||||||||||
Sbjct 547 TCGTTGGACAGCGTGAGACAGTTTGTTGATAATTTCAGGAGAACAGAGACGCCTCTCGAT 606
Query 391 GTGTTGGTCTGCAATGCTGCGGTTTATCAGCCAACAGCTAATCAACCTACTTTCACTGCT 450
|| |||||||||||||||||||||||| || |||||||| | ||||||| || ||||
Sbjct 607 GTTTTGGTCTGCAATGCTGCGGTTTATTTCCCGACAGCTAAAGAGCCTACTTACAGTGCT 666
Query 451 GAAGGGTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTG 510
||||||||||||||||| |||| || ||||||||||| || |||||||| |||| |||
Sbjct 667 GAAGGGTTTGAGCTTAGTGTTGCGACGAACCATTTGGGACATTTTCTTCTCGCAAGGTTG 726
Query 511 TTGATTGATGACTTAAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCC 570
||| |||||||||| ||||| || ||||| || ||||| ||||||||||| || ||||||
Sbjct 727 TTGCTTGATGACTTGAAGAAATCTGATTACCCTTCAAAGCGTCTCATCATCGTCGGATCC 786
Query 571 ATAACCGGAAATACTAATACATTGGCGGGTAATGTACCTCCGAAGGCGAATCTTGGTGAT 630
|| ||||| || || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 787 ATTACCGGGAACACGAATACATTGGCGGGTAATGTACCACCGAAGGCGAATCTCGGTGAT 846
Query 631 TTGAGGGGATTAGCAGGTGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGA 690
|||||||| ||||| || || || ||||| |||||||||| || ||||| |||||||||
Sbjct 847 TTGAGGGGTTTAGCCGGCGGATTAAACGGTTTAAACAGCTCAGCTATGATTGATGGAGGA 906
Query 691 GATTTCGTTGGGGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAA 750
||||||| || |||||||| || ||||| || ||||||||||| |||||||||||||||
Sbjct 907 GATTTCGACGGTGCAAAGGCTTACAAAGACAGTAAAGTCTGCAATATGTTGACAATGCAA 966
Query 751 GAGTATCATAGGCGTTTCCATGAAGACACCGGCA-TAACTTTTGCTTCCCTGTACCCCGG 809
|||| ||| ||||||||||||||||| || || | | ||||| ||||| || ||||||||
Sbjct 967 GAGTTTCACAGGCGTTTCCATGAAGAAACTGG-AGTCACTTTCGCTTCGCTTTACCCCGG 1025
Query 810 TTGTATCGCGACAACTGGTTTGTTCAGAGAACATATACCTCTCTTCCGTACCCTCTTCCC 869
||| ||||| | || ||||| ||| |||| || || |||||||||||| ||||||||||
Sbjct 1026 TTGCATCGCCTCCACAGGTTTATTCCGAGAGCACATTCCTCTCTTCCGTGCCCTCTTCCC 1085
Query 870 TCC-TTTCCAGAAGTACATCACAAAAGGTTACGTCTCCGAGACAGAGGCTGGGAAAAGAC 928
||| |||| ||||||||||||| ||||| || |||||||| |||||| | || |||||||
Sbjct 1086 TCCCTTTC-AGAAGTACATCACTAAAGGATATGTCTCCGAAACAGAGTCAGGCAAAAGAC 1144
Query 929 TTGCTCAGGTGGTGGGTGACCCAAGCTTGACGAAGTC-GGGAGTGTATTGGAGCTGGAAC 987
|||||||||||||| |||| |||||||||||||| || ||| || |||||||||||||||
Sbjct 1145 TTGCTCAGGTGGTGAGTGATCCAAGCTTGACGAAATCAGGG-GTTTATTGGAGCTGGAAC 1203
Query 988 CAA-GACCTCGGCTTCATTTGA 1008
|| | | |||||||| |||||
Sbjct 1204 -AATG-CTTCGGCTTCTTTTGA 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5