BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg359800
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition ... 137 1e-31
AT1G48900.1 | Symbols: | Signal recognition particle, SRP54 su... 132 5e-30
AT5G66970.1 | Symbols: | P-loop containing nucleoside triphosp... 60.2 2e-08
> AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition
particle 54 kDa subunit | chr1:5269019-5272058 REVERSE LENGTH=1705
Length=1705
Score = 137 bits (74), Expect = 1e-31
Identities = 195/252 (77%), Gaps = 14/252 (6%)
Strand=Plus/Plus
Query 4 CCAGCTCGTGTTGTATATGTCATGGATAGCAGTATTGGTCAAGCTGCATTTGATCAAGCT 63
|||| || |||| ||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 751 CCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTTGAACAAGCT 810
Query 64 CAAGCATTCAAGCAA--TGTTTCACTCGT-GGAGTTGTCATTATTACTAATATACACGGC 120
|||| || ||| || ||| || | || |||| ||| ||||||||||| || |||||
Sbjct 811 GAAGCTTTTAAGGAAACTGTATC--T-GTTGGAGCTGTAATTATTACTAAGATGGACGGC 867
Query 121 AACT-CCAAAGCATGTGGTGCTATCATCTCTGTTGCAGC-AGCAAAGTGTCCCATGATAT 178
| | |||| | | |||||||| | | | |||||||||| | |||| |||| ||||||
Sbjct 868 CA-TGCCAAGGGAGGTGGTGCTCTTAGCGCTGTTGCAGCTA-CAAAAAGTCCTGTGATAT 925
Query 179 T-AGCTGAAACAGGAGAGAAGA-GAGAGGATTTTGAAGCATTTGAAGCTGAAGCTTTTGT 236
| | || |||||||||| | | | || || ||||||| ||||| | | || | |||||
Sbjct 926 TCAT-TGGAACAGGAGAGCATATG-GATGAGTTTGAAGTGTTTGACGTTAAACCATTTGT 983
Query 237 CAGGAGTCTCTT 248
||| |||||||
Sbjct 984 CAGCCGTCTCTT 995
> AT1G48900.1 | Symbols: | Signal recognition particle, SRP54
subunit protein | chr1:18084782-18087879 REVERSE LENGTH=1814
Length=1814
Score = 132 bits (71), Expect = 5e-30
Identities = 197/255 (77%), Gaps = 20/255 (8%)
Strand=Plus/Plus
Query 4 CCAGCTCGTGTTGTATATGTCATGGATAGCAGTATTGGTCAAGCTGCATTTGATCAAGCT 63
|||| || |||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 776 CCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCTGCATTTGATCAAGCT 835
Query 64 CAAGCATTCAAGCA-A-TGTTTCACTCGT-GGAGTTGTCATTATTACTAATATACACGGC 120
||||| || ||||| | |||| | | || |||| ||| ||||||||||| || |||||
Sbjct 836 CAAGCCTTTAAGCAGAGTGTTGC--T-GTTGGAGCTGTAATTATTACTAAGATGGACGGC 892
Query 121 AACT-CCAAAGCATG-TGGTGCTATCATCTCTGTTGCAGC-A-GCAAAGTGTCCCATGAT 176
| | |||| | || ||| ||| | | | |||||||||| | | ||||| || ||||
Sbjct 893 CA-TGCCAAGGG-TGGTGGGGCTCTTAGCGCTGTTGCAGCTACGAAAAGT--CCTGTGAT 948
Query 177 ATT-AGCTGAAACAGGAGAGAAGA-GAGAGGATTTTGAAGCATTTGAAGCTGAAGCT-TT 233
||| | | ||| |||||||| | | | || || ||||||| ||||| | | || | ||
Sbjct 949 ATTTATCGGAA-CAGGAGAGCATATG-GATGAGTTTGAAGTGTTTGACG-TCAAACCATT 1005
Query 234 TGTCAGGAGTCTCTT 248
|||||| |||||||
Sbjct 1006 TGTCAGCCGTCTCTT 1020
> AT5G66970.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:26740445-26741125
REVERSE LENGTH=528
Length=528
Score = 60.2 bits (32), Expect = 2e-08
Identities = 39/42 (93%), Gaps = 1/42 (2%)
Strand=Plus/Plus
Query 209 TTGAAGCATTTGAAGCTGAAGCTTTTGTCAGGAGTCTCTTGA 250
||| || |||| ||||||||||||||||||||||||||||||
Sbjct 488 TTG-AGTATTTCAAGCTGAAGCTTTTGTCAGGAGTCTCTTGA 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5