BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470048 Length=2131 Score E Sequences producing significant alignments: (Bits) Value AT1G02190.1 | Symbols: | Fatty acid hydroxylase superfamily | ... 3055 0.0 AT5G28280.1 | Symbols: | pseudogene, sterol desaturase domain-... 292 7e-78 AT1G02205.3 | Symbols: CER1 | Fatty acid hydroxylase superfamil... 222 1e-56 AT2G37700.1 | Symbols: | Fatty acid hydroxylase superfamily | ... 135 1e-30 > AT1G02190.1 | Symbols: | Fatty acid hydroxylase superfamily | chr1:415079-418010 FORWARD LENGTH=2173 Length=2173 Score = 3055 bits (1654), Expect = 0.0 Identities = 2022/2188 (92%), Gaps = 72/2188 (3%) Strand=Plus/Plus Query 1 ACATTCTAAACAAGTACCTCCAAATTGCACTTCCTTCAAACTTCTTCGACAGTAGACTAG 60 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 ACATTATAAACAAGTACCTCCAAATTGCACTTCCTTCAAACTTATTCGACAGTAGACTAG 60 Query 61 CTCAAGTACCTTTGGATGGCATTGAGACCCGGAGCTCTTACGGAGTGGCCATGGAGTCCC 120 |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 61 CTCAAGTACCTTTGGATGGCGTCGAGGCCCGGAGCTCTTACGGAGTGGCCATGGAGTCCC 120 Query 121 CTTGGTAGCTTCAAGTACCTCTTGGTGGCCCCGTTGGTGATGGCGAGCATGCACTCGTAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTTGGTAGCTTCAAGTACCTCTTGGTGGCCCCGTTGGTGATGGCGAGCATGCACTCGTAC 180 Query 181 GTGACGGCGGCTGTGGATGAGGAGAAAGACCTCACCAGACTGATGATAGTCGTGTTGACG 240 |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| | Sbjct 181 GTGA---CGGCTGTGGATGAGGAGAAAGACCTCAGCAGACTTATGATAGTCGTGTTGATG 237 Query 241 CTGTGGCGAATAGTTCACAGCCAGATATGGATCAGCGTGTCTCGCCAGAGGACGGCTAAG 300 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 CTGTGGAGAATAGTTCACAGCCAGATATGGATCAGCGTGTCTCGCCAGAGGACGGCTAAG 297 Query 301 GGAACGAACAAGATCGTGTACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCGCTCT 360 |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || Sbjct 298 GGAACGAACAAGATCGTGGACAAGCCCATTGAGTTTGAGCAAGTGGACCGAGAGCGCACT 357 Query 361 TGGGACGACCAAATCATCTTCAACACTCTCCTCATGTATCTCGCAAACATCAAGCTCCCA 420 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TGGGACGACCAAGTCATCTTCAACACTCTCCTCATGTATCTCGCAAACATCAAGCTCCCA 417 Query 421 GGCGCCTCCCACCTTCCCCCCTGGAGACTAGATGGAGCCATCCTCATGGCTCTACTTCAC 480 |||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||| Sbjct 418 GGCGCCTCCCACCTTCCCCCATGGAGGCTAGACGGGGCCATCCTCATGGCTCTACTTCAC 477 Query 481 GC---T---G--GAGTTCCTCTACTACTGGTTCCACAGAGCTCTCCACCACCATTTCCTC 532 || | | ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 478 GCTGGTCCCGTCGAGTTTCTCTACTACTGGTTTCACAGAGCTCTCCACCACCATTTCCTC 537 Query 533 TACTCTCGCTACCATTCTCACCACCA-T--TCC----T--------CCAT----TCTGTG 573 |||||||||||||||||||||||||| | ||| | |||| |||||| Sbjct 538 TACTCTCGCTACCATTCTCACCACCACTCCTCCATTGTCACCGAGCCCATCACGTCTGTG 597 Query 574 GTGCACCCCTTCGCCGAACACATCGCCTACTCACTACTCTTTGCCATACCCATGGTAACG 633 ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| Sbjct 598 GTGCACCCCTTCGCCGAGCACATCGCCTACACACTACTCTTTGCCATACCTATGGTAACG 657 Query 634 GCGTCCCTGTGTGGGATCCTCTCCATTGTTTCCATCATTGCATACATTACTTACATTGAC 693 |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| Sbjct 658 GCGTCCCTGTGTGGGATCCTCTCCATCGTTTCCATCATGGGATACATTACTTACATTGAC 717 Query 694 TTCATGAACAACATGGGACATTGTAACTTCGAGGTTTTCCCTAAGCGTCTCTTCCACCTC 753 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 718 TTCATGAACAACATGGGACATTGCAACTTCGAGCTTTTCCCTAAGCGTCTCTTCCACCTC 777 Query 754 TTCCCTCCCCTCAAGTTCCTCTGCTACACCCCCTCGTTTCACTCGCTCCACCACACGCAG 813 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 778 TTCCCTCCCCTCAAGTTCCTCTGTTACACCCCCTCGTTTCACTCGCTCCACCACACGCAG 837 Query 814 TTCCGGACCAACTACTCTCTGTTCATGCCAATATACGACTACATCTACGGGACGACTGAT 873 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 838 TTCCGGACCAACTACTCTCTGTTCATGCCAATATACGACTTCATCTACGGGACGACTGAT 897 Query 874 AATTTGACCGAGTCATTATACGAGAGGTCGTTGGAGAGAGAGGAAGAATCACCCGACATC 933 ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| || Sbjct 898 AATTTGACCGACTCACTATACGAGAGGTCGTTGGAGATAGAGGAAGAATCACCCGACGTC 957 Query 934 ATTCACCTCACTCACCTTACCACACGCGATTCCATCTACCAAATGCGCCTTGGTTTCCCG 993 || |||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| Sbjct 958 ATCCACCTCACTCACCTCACCACACACAACTCCATCTACCAAATGCGCCTTGGTTTCCCG 1017 Query 994 TCCCTCTCCTCTTGCCCCTTATGGTCTCGATCCCCATGGTACCTCACATGCTTCATGTGG 1053 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1018 TCCCTCTCCTCTTGCCCCTTGTGGTCTCGACCCCCATGGTACCTCACATGCTTCATGTGG 1077 Query 1054 CCCTTCACTCTCCTCTGCTCATTTGTGCTCACCTCCGCTCTCTCC-TCGCGCACCTTTGT 1112 ||||||||||||||||||||||||| ||||| || ||| || || | |||||||||||| Sbjct 1078 CCCTTCACTCTCCTCTGCTCATTTGCCCTCACTTCAGCTATC-CCTTTGCGCACCTTTGT 1136 Query 1113 CTTTGAGCGAAACCGTCTCCGTGATCTCACCCTTCACTCTCACCTCCTTCCCAA------ 1166 |||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 1137 CTTTGAGCGAAACCGTCTCCGTGACCTCACCGTTCACTCTCACCTCCTTCCCAAGTTTTC 1196 Query 1167 CTTTTACTATAAATCACTGCGCCACCATGAGTCCATCAACAATATCATAGAGGAAGTTAT 1226 |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1197 CTTTCACTATAAATCACAGCGCCACCATGAGTCCATCAACACTATCATAGAGGAAGCTAT 1256 Query 1227 TCTTGAAGCAGATGAAAAGGGTGTGAAAGTAATCAGTCTTGGCCTGATGAACAATAGGGA 1286 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1257 CCTTGAAGCAGATGAAAAGGGTGTGAAAGTAATGAGTCTTGGCCTGATGAACAATAGGGA 1316 Query 1287 GGAACTAAACAAGTCTGGAGAAATCTACGTGCAAAAGTATCCGAAGTTGAAGATGAGACT 1346 |||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1317 GGAACTAAACGGGTCTGGAGAAATGTACGTGCAAAAGTATCCGAAGTTGAAGATAAGACT 1376 Query 1347 AGTGGACGGGAGCAGCATGGCAGCTGCGGTGGTTATCAACAATATTCCAAAGGAAACCAC 1406 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1377 AGTGGACGGGAGCAGCATGGCAGCTACGGTGGTTATCAACAATATTCCAAAGGAAGCCAC 1436 Query 1407 GGAAATTGTCTTTAGAGGAAATCTCACAAAGGTCGCTTCGGCTGTTGTCTTTGCTCTGTG 1466 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1437 GGAAATTGTCTTTAGAGGAAATCTCACAAAGGTGGCTTCGGCTGTTGTCTTTGCTCTGTG 1496 Query 1467 CCAAAAGGGCGTCAAGGTGGTCGTGTTACGCGAGGAGGAACACAGCAAACTCATCAAATC 1526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 CCAAAAGGGCGTCAAGGTGGTCGTGTTACGCGAGGAGGAACACAGCAAACTCATCAAATC 1556 Query 1527 TGGGGTTGGCAAGAATCTGGTACTGTCTACAAGCAATAGTTATTACTCCCCAACGGTGTG 1586 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1557 TGGGGTTGACAAGAATCTGGTACTGTCTACAAGCAATAGTTATTACTCCCCAAAGGTGTG 1616 Query 1587 GTTGGTGGGGGATGGAATAGAGAACGAAGAGCAGATGAAGGCAAAAGAAGGAACCCTCTT 1646 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1617 GTTGGTGGGGGATGGAATAGAGAACGAAGAGCAGATGAAAGCAAAAGAAGGAACCCTCTT 1676 Query 1647 TGTTCCCTTTTCTCACTTTCCGCCCAACAAACTCCGCAAGGACTGTTTCTACGAGTCCAC 1706 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1677 TGTTCCCTTTTCTCACTTTCCGCCCAACAAACTCCGCAAGGACTGTTTCTACCAGTCCAC 1736 Query 1707 TCCAGCTATGCGTGTTCCCAACTCTGCCCAAATCATCGACTCATGTGAGAACTGGCTGGG 1766 ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| Sbjct 1737 TCCAGCTATGCGTGTTCCCAAGTCTGCCCAAAACATCGACTCCTGTGAGAACTGGCTGGG 1796 Query 1767 AAGGAGGGTGATGAGTGCATGGAAAGTAGGAGGTATAGTGCATGCCCTTGAAGGTTGGGA 1826 |||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| Sbjct 1797 GAGGAGGGTGATGAGTGCATGGAAAATAGGAGGTATAGTGCATGCACTTGAGGGTTGGGA 1856 Query 1827 GGAGCATGACTGCGGCAACACTTGCAACGTCCTCCGTCTCCACGCCATCTGGGAAGCTGC 1886 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1857 GGAGCATGACTGCGGCAACACTTGCAACGTCCTCCGTCTCCACGCCATATGGGAAGCTGC 1916 Query 1887 TCTTCGCCATGATTTCCAACCTCTCCGTCTCCCGCCATCTCATCTATGAGCTTTT--CAT 1944 |||||||||||||||||||||||||| | || ||||| ||||||||||||| ||| Sbjct 1917 TCTTCGCCATGATTTCCAACCTCTCC--CACC----ATCTCCTCTATGAGCTTTTTTCAT 1970 Query 1945 ATTCATA-ATCTAC-TCCCCTTCCAGTG-TT-TG-C--CGT---TT--ATCAT-GTTT-- 1989 ||||||| ||||| ||||||| | || || | | | | || ||||| |||| Sbjct 1971 ATTCATACATCTATGTCCCCTTTCT-TGATTATATCTACTTCCCTTCCATCATTGTTTGC 2029 Query 1990 T-TCTA-TA-GACtatatatatataAG-TACTA-GCTACACCTTGTTACGCTTGGTGCCA 2044 | | || || | | | ||| | || || || | ||| ||||||||| |||||||||| Sbjct 2030 TGTTTACTATGTTTTTCTATCGACAATATA-TAAG-TAC-CCTTGTTACCCTTGGTGCCA 2086 Query 2045 CGTGCTTCATATATGTTAGAAAGGGCAAACAATTTCGTCGTTTGAAATGCTTAGTTAAAT 2104 ||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||| Sbjct 2087 CGTGCTTCATATATGTTAGAAAGGGCAAAAAAATTCGTCGTATGATATGCTTAGTTAAAT 2146 Query 2105 TTTGA-AAAACTCAATAAAAATCTTCAG 2131 ||| | |||||||||||||||||||||| Sbjct 2147 TTT-ATAAAACTCAATAAAAATCTTCAG 2173 > AT5G28280.1 | Symbols: | pseudogene, sterol desaturase domain-containing protein, CER1-like, A.thaliana, ATCER1L19; blastp match of 55% identity and 8.9e-22 P-value to GP|4769012|gb|AAD29719.1|AF143746_1|AF143746 CER1 {Oryza sativa} | chr5:10261017-10263283 FORWARD LENGTH=2267 Length=2267 Score = 292 bits (158), Expect = 7e-78 Identities = 201/222 (91%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 569 CTGTGGTGCACCCCTTCGCCGAACACATCGCCTACTCACTACTCTTTGCCATACCCATGG 628 |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| | Sbjct 616 CTGTGGTGCACCCCTTCGCCGAGCACATCGCCTACTCAGTACTCTTCGCCATACCCATAG 675 Query 629 TAACGGCGTCCCTGTGTGGGATCCTCTCCATTGTTTCCATCATTGCATACATTACTTACA 688 |||||| |||||| ||||||||||||||||||||| || || |||||||| ||||||||| Sbjct 676 TAACGGTGTCCCTATGTGGGATCCTCTCCATTGTTCCCTTCGTTGCATACGTTACTTACA 735 Query 689 TTGACTTCATGAACAACATGGGACATTGTAACTTCGAGGTTTTCCCTAAGCGTCTCTTCC 748 |||||||||||||| | |||||||| | ||||||||| ||||||||||||||||||| | Sbjct 736 TTGACTTCATGAACTATATGGGACACTACAACTTCGAGTTTTTCCCTAAGCGTCTCTTTC 795 Query 749 ACCTCTTCCCTCCCCTCAAGTTCCTCTGCTACACCCCCTCGT 790 | | ||||||| ||||||||||||||||||||||||||||| Sbjct 796 ATCA-TTCCCTCTCCTCAAGTTCCTCTGCTACACCCCCTCGT 836 Score = 202 bits (109), Expect = 1e-50 Identities = 215/263 (82%), Gaps = 20/263 (8%) Strand=Plus/Plus Query 316 GTGTACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCGCTCTTGGGACGACCAAATC 375 ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 263 GTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCAATCTTGGGACGACCAAATC 322 Query 376 ATCTTCAACACTCTCCTCATGTATCTCG-CAAACATCAAGCTCCCAGGC-GCCTCCCACC 433 ||||||||||| ||| |||||||||||| ||| || ||| ||||||||| || || | Sbjct 323 ATCTTCAACACGCTCTTCATGTATCTCGTCAA-CAACAAACTCCCAGGCTGC-TCGCGTA 380 Query 434 TTCCC-CCCTGGAGACTAG-ATGGAGC--CAT--C--CT-CATGGCTCTACTTCACGCTG 484 | ||| ||| | || | ||| || | | | || |||| || | | | || | Sbjct 381 T-CCCTCCCAAGCCACCATCATGT-GCTTCTTTTCTACTTCATG-CTGTTC--C-CG-TC 433 Query 485 GAGTTCCTCTACTACTGGTTCCACAGAGCTCTCCACCACCATTTCCTCTACTCTCGCTAC 544 |||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| ||| Sbjct 434 GAGTTCTTATACTACTGGTTCCACAGATCTCTCCACCACCACTTCCTCTACTCTCGTTAC 493 Query 545 CATTCTCACCACCATTCCTCCAT 567 |||||||||||||| |||||||| Sbjct 494 CATTCTCACCACCACTCCTCCAT 516 > AT1G02205.3 | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:418748-422258 FORWARD LENGTH=2067 Length=2067 Score = 222 bits (120), Expect = 1e-56 Identities = 167/190 (88%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 675 ATACATTACT-TACATTGACTTCATGAACAACATGGGACATTGTAACTTCGAGGTTTTCC 733 ||||| || | ||||| ||||||||||||||||||||||| || ||||||||| | ||| Sbjct 694 ATACA-TAATCTACATAGACTTCATGAACAACATGGGACACTGCAACTTCGAGCTAATCC 752 Query 734 CTAAGCGTCTCTTCCACCTCTTCCCTCCCCTCAAGTTCCTCTGCTACACCCCCTCGTTTC 793 ||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| | | Sbjct 753 CTAAGCGCCTTTTCCACCTCTTTCCTCCCCTCAAGTTCCTCTGTTACACCCCCTCATACC 812 Query 794 ACTCGCTCCACCACACGCAGTTCCGGACCAACTACTCTCTGTTCATGCCAATATACGACT 853 ||||||| ||||||||||||||||||||||||||||| || |||||||| | || |||| Sbjct 813 ACTCGCTGCACCACACGCAGTTCCGGACCAACTACTCCCTCTTCATGCCCTTGTATGACT 872 Query 854 ACATCTACGG 863 |||||||||| Sbjct 873 ACATCTACGG 882 > AT2G37700.1 | Symbols: | Fatty acid hydroxylase superfamily | chr2:15810581-15814208 REVERSE LENGTH=1874 Length=1874 Score = 135 bits (73), Expect = 1e-30 Identities = 267/355 (75%), Gaps = 36/355 (10%) Strand=Plus/Plus Query 236 TGACGCTGTGGCGAATAGTTCACAGCCAGATATGGATCAGCGTGTCTCG---CCAGAGGA 292 ||||| ||||||| || ||||| ||||| |||||||| || | || || ||| | | Sbjct 178 TGACGGTGTGGCGGATTGTTCATAGCCAAATATGGATAAGTTTATCCCGTTACCA-A--A 234 Query 293 CGGCTAAGGGAACGAA-CAAGATCGTGTACAAGCCCATTGAGTTCGAGCAAGTGGACCGA 351 | || || ||||| || | |||| || ||||| |||| ||||| || ||||| |||||| Sbjct 235 CTGCAAAAGGAACCAAGC-GGATCCTGAACAAGTCCATAGAGTTTGACCAAGTTGACCGA 293 Query 352 GAGCGCTCTTGGGACGACCAAATCATCTTCAACACTCTCCTCATGTAT-C-T--CGCAAA 407 || || | |||||||| || |||||||||||||||||| | ||| | | | | |||| Sbjct 294 GAACGAACCTGGGACGATCAGATCATCTTCAACACTCTCAT--TGTTTACTTAAC-CAAA 350 Query 408 CAT-CAAGCTCCCAGGCG-CCTCCCACC-TTCCCCCCTGGAG-ACTAGATGGAGCCATCC 463 | | | || |||| | || ||| ||||| |||| | || ||||||| || | Sbjct 351 -GTGTACG-TCTCAGG-GACC-AGTACCATTCCCTTCTGGCGAAC-CGATGGAGTGAT-C 404 Query 464 TCA-TGGCTCTACTTCA--C--G--C--TGGAGTTCCTCTACTACTGGTTCCA-CAGAGC 513 | | | ||||| || || | | | |||||||| ||||||||||||| || | |||| Sbjct 405 TTAGTCGCTCTCCTCCATGCTGGTCCGGTGGAGTTCATCTACTACTGGTTTCATC-GAGC 463 Query 514 TCTCCACCACCATTTCCTCTACTCTCGCTACCATTCTCACCACCATTCCTCCATT 568 || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 464 CCTTCACCACCACTTCCTCTACTCTCGCTACCATTCTCACCACCATTCCTCCATT 518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105672147225 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5