BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470048
Length=2131
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02190.1 | Symbols: | Fatty acid hydroxylase superfamily | ... 3055 0.0
AT5G28280.1 | Symbols: | pseudogene, sterol desaturase domain-... 292 7e-78
AT1G02205.3 | Symbols: CER1 | Fatty acid hydroxylase superfamil... 222 1e-56
AT2G37700.1 | Symbols: | Fatty acid hydroxylase superfamily | ... 135 1e-30
> AT1G02190.1 | Symbols: | Fatty acid hydroxylase superfamily
| chr1:415079-418010 FORWARD LENGTH=2173
Length=2173
Score = 3055 bits (1654), Expect = 0.0
Identities = 2022/2188 (92%), Gaps = 72/2188 (3%)
Strand=Plus/Plus
Query 1 ACATTCTAAACAAGTACCTCCAAATTGCACTTCCTTCAAACTTCTTCGACAGTAGACTAG 60
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ACATTATAAACAAGTACCTCCAAATTGCACTTCCTTCAAACTTATTCGACAGTAGACTAG 60
Query 61 CTCAAGTACCTTTGGATGGCATTGAGACCCGGAGCTCTTACGGAGTGGCCATGGAGTCCC 120
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 61 CTCAAGTACCTTTGGATGGCGTCGAGGCCCGGAGCTCTTACGGAGTGGCCATGGAGTCCC 120
Query 121 CTTGGTAGCTTCAAGTACCTCTTGGTGGCCCCGTTGGTGATGGCGAGCATGCACTCGTAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTGGTAGCTTCAAGTACCTCTTGGTGGCCCCGTTGGTGATGGCGAGCATGCACTCGTAC 180
Query 181 GTGACGGCGGCTGTGGATGAGGAGAAAGACCTCACCAGACTGATGATAGTCGTGTTGACG 240
|||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |
Sbjct 181 GTGA---CGGCTGTGGATGAGGAGAAAGACCTCAGCAGACTTATGATAGTCGTGTTGATG 237
Query 241 CTGTGGCGAATAGTTCACAGCCAGATATGGATCAGCGTGTCTCGCCAGAGGACGGCTAAG 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTGTGGAGAATAGTTCACAGCCAGATATGGATCAGCGTGTCTCGCCAGAGGACGGCTAAG 297
Query 301 GGAACGAACAAGATCGTGTACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCGCTCT 360
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||
Sbjct 298 GGAACGAACAAGATCGTGGACAAGCCCATTGAGTTTGAGCAAGTGGACCGAGAGCGCACT 357
Query 361 TGGGACGACCAAATCATCTTCAACACTCTCCTCATGTATCTCGCAAACATCAAGCTCCCA 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGGGACGACCAAGTCATCTTCAACACTCTCCTCATGTATCTCGCAAACATCAAGCTCCCA 417
Query 421 GGCGCCTCCCACCTTCCCCCCTGGAGACTAGATGGAGCCATCCTCATGGCTCTACTTCAC 480
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 418 GGCGCCTCCCACCTTCCCCCATGGAGGCTAGACGGGGCCATCCTCATGGCTCTACTTCAC 477
Query 481 GC---T---G--GAGTTCCTCTACTACTGGTTCCACAGAGCTCTCCACCACCATTTCCTC 532
|| | | ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 GCTGGTCCCGTCGAGTTTCTCTACTACTGGTTTCACAGAGCTCTCCACCACCATTTCCTC 537
Query 533 TACTCTCGCTACCATTCTCACCACCA-T--TCC----T--------CCAT----TCTGTG 573
|||||||||||||||||||||||||| | ||| | |||| ||||||
Sbjct 538 TACTCTCGCTACCATTCTCACCACCACTCCTCCATTGTCACCGAGCCCATCACGTCTGTG 597
Query 574 GTGCACCCCTTCGCCGAACACATCGCCTACTCACTACTCTTTGCCATACCCATGGTAACG 633
||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||
Sbjct 598 GTGCACCCCTTCGCCGAGCACATCGCCTACACACTACTCTTTGCCATACCTATGGTAACG 657
Query 634 GCGTCCCTGTGTGGGATCCTCTCCATTGTTTCCATCATTGCATACATTACTTACATTGAC 693
|||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 658 GCGTCCCTGTGTGGGATCCTCTCCATCGTTTCCATCATGGGATACATTACTTACATTGAC 717
Query 694 TTCATGAACAACATGGGACATTGTAACTTCGAGGTTTTCCCTAAGCGTCTCTTCCACCTC 753
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 718 TTCATGAACAACATGGGACATTGCAACTTCGAGCTTTTCCCTAAGCGTCTCTTCCACCTC 777
Query 754 TTCCCTCCCCTCAAGTTCCTCTGCTACACCCCCTCGTTTCACTCGCTCCACCACACGCAG 813
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 TTCCCTCCCCTCAAGTTCCTCTGTTACACCCCCTCGTTTCACTCGCTCCACCACACGCAG 837
Query 814 TTCCGGACCAACTACTCTCTGTTCATGCCAATATACGACTACATCTACGGGACGACTGAT 873
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 838 TTCCGGACCAACTACTCTCTGTTCATGCCAATATACGACTTCATCTACGGGACGACTGAT 897
Query 874 AATTTGACCGAGTCATTATACGAGAGGTCGTTGGAGAGAGAGGAAGAATCACCCGACATC 933
||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 898 AATTTGACCGACTCACTATACGAGAGGTCGTTGGAGATAGAGGAAGAATCACCCGACGTC 957
Query 934 ATTCACCTCACTCACCTTACCACACGCGATTCCATCTACCAAATGCGCCTTGGTTTCCCG 993
|| |||||||||||||| ||||||| | | ||||||||||||||||||||||||||||||
Sbjct 958 ATCCACCTCACTCACCTCACCACACACAACTCCATCTACCAAATGCGCCTTGGTTTCCCG 1017
Query 994 TCCCTCTCCTCTTGCCCCTTATGGTCTCGATCCCCATGGTACCTCACATGCTTCATGTGG 1053
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1018 TCCCTCTCCTCTTGCCCCTTGTGGTCTCGACCCCCATGGTACCTCACATGCTTCATGTGG 1077
Query 1054 CCCTTCACTCTCCTCTGCTCATTTGTGCTCACCTCCGCTCTCTCC-TCGCGCACCTTTGT 1112
||||||||||||||||||||||||| ||||| || ||| || || | ||||||||||||
Sbjct 1078 CCCTTCACTCTCCTCTGCTCATTTGCCCTCACTTCAGCTATC-CCTTTGCGCACCTTTGT 1136
Query 1113 CTTTGAGCGAAACCGTCTCCGTGATCTCACCCTTCACTCTCACCTCCTTCCCAA------ 1166
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1137 CTTTGAGCGAAACCGTCTCCGTGACCTCACCGTTCACTCTCACCTCCTTCCCAAGTTTTC 1196
Query 1167 CTTTTACTATAAATCACTGCGCCACCATGAGTCCATCAACAATATCATAGAGGAAGTTAT 1226
|||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1197 CTTTCACTATAAATCACAGCGCCACCATGAGTCCATCAACACTATCATAGAGGAAGCTAT 1256
Query 1227 TCTTGAAGCAGATGAAAAGGGTGTGAAAGTAATCAGTCTTGGCCTGATGAACAATAGGGA 1286
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1257 CCTTGAAGCAGATGAAAAGGGTGTGAAAGTAATGAGTCTTGGCCTGATGAACAATAGGGA 1316
Query 1287 GGAACTAAACAAGTCTGGAGAAATCTACGTGCAAAAGTATCCGAAGTTGAAGATGAGACT 1346
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1317 GGAACTAAACGGGTCTGGAGAAATGTACGTGCAAAAGTATCCGAAGTTGAAGATAAGACT 1376
Query 1347 AGTGGACGGGAGCAGCATGGCAGCTGCGGTGGTTATCAACAATATTCCAAAGGAAACCAC 1406
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1377 AGTGGACGGGAGCAGCATGGCAGCTACGGTGGTTATCAACAATATTCCAAAGGAAGCCAC 1436
Query 1407 GGAAATTGTCTTTAGAGGAAATCTCACAAAGGTCGCTTCGGCTGTTGTCTTTGCTCTGTG 1466
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1437 GGAAATTGTCTTTAGAGGAAATCTCACAAAGGTGGCTTCGGCTGTTGTCTTTGCTCTGTG 1496
Query 1467 CCAAAAGGGCGTCAAGGTGGTCGTGTTACGCGAGGAGGAACACAGCAAACTCATCAAATC 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CCAAAAGGGCGTCAAGGTGGTCGTGTTACGCGAGGAGGAACACAGCAAACTCATCAAATC 1556
Query 1527 TGGGGTTGGCAAGAATCTGGTACTGTCTACAAGCAATAGTTATTACTCCCCAACGGTGTG 1586
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1557 TGGGGTTGACAAGAATCTGGTACTGTCTACAAGCAATAGTTATTACTCCCCAAAGGTGTG 1616
Query 1587 GTTGGTGGGGGATGGAATAGAGAACGAAGAGCAGATGAAGGCAAAAGAAGGAACCCTCTT 1646
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1617 GTTGGTGGGGGATGGAATAGAGAACGAAGAGCAGATGAAAGCAAAAGAAGGAACCCTCTT 1676
Query 1647 TGTTCCCTTTTCTCACTTTCCGCCCAACAAACTCCGCAAGGACTGTTTCTACGAGTCCAC 1706
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1677 TGTTCCCTTTTCTCACTTTCCGCCCAACAAACTCCGCAAGGACTGTTTCTACCAGTCCAC 1736
Query 1707 TCCAGCTATGCGTGTTCCCAACTCTGCCCAAATCATCGACTCATGTGAGAACTGGCTGGG 1766
||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||
Sbjct 1737 TCCAGCTATGCGTGTTCCCAAGTCTGCCCAAAACATCGACTCCTGTGAGAACTGGCTGGG 1796
Query 1767 AAGGAGGGTGATGAGTGCATGGAAAGTAGGAGGTATAGTGCATGCCCTTGAAGGTTGGGA 1826
|||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1797 GAGGAGGGTGATGAGTGCATGGAAAATAGGAGGTATAGTGCATGCACTTGAGGGTTGGGA 1856
Query 1827 GGAGCATGACTGCGGCAACACTTGCAACGTCCTCCGTCTCCACGCCATCTGGGAAGCTGC 1886
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1857 GGAGCATGACTGCGGCAACACTTGCAACGTCCTCCGTCTCCACGCCATATGGGAAGCTGC 1916
Query 1887 TCTTCGCCATGATTTCCAACCTCTCCGTCTCCCGCCATCTCATCTATGAGCTTTT--CAT 1944
|||||||||||||||||||||||||| | || ||||| ||||||||||||| |||
Sbjct 1917 TCTTCGCCATGATTTCCAACCTCTCC--CACC----ATCTCCTCTATGAGCTTTTTTCAT 1970
Query 1945 ATTCATA-ATCTAC-TCCCCTTCCAGTG-TT-TG-C--CGT---TT--ATCAT-GTTT-- 1989
||||||| ||||| ||||||| | || || | | | | || ||||| ||||
Sbjct 1971 ATTCATACATCTATGTCCCCTTTCT-TGATTATATCTACTTCCCTTCCATCATTGTTTGC 2029
Query 1990 T-TCTA-TA-GACtatatatatataAG-TACTA-GCTACACCTTGTTACGCTTGGTGCCA 2044
| | || || | | | ||| | || || || | ||| ||||||||| ||||||||||
Sbjct 2030 TGTTTACTATGTTTTTCTATCGACAATATA-TAAG-TAC-CCTTGTTACCCTTGGTGCCA 2086
Query 2045 CGTGCTTCATATATGTTAGAAAGGGCAAACAATTTCGTCGTTTGAAATGCTTAGTTAAAT 2104
||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||
Sbjct 2087 CGTGCTTCATATATGTTAGAAAGGGCAAAAAAATTCGTCGTATGATATGCTTAGTTAAAT 2146
Query 2105 TTTGA-AAAACTCAATAAAAATCTTCAG 2131
||| | ||||||||||||||||||||||
Sbjct 2147 TTT-ATAAAACTCAATAAAAATCTTCAG 2173
> AT5G28280.1 | Symbols: | pseudogene, sterol desaturase domain-containing
protein, CER1-like, A.thaliana, ATCER1L19; blastp
match of 55% identity and 8.9e-22 P-value to GP|4769012|gb|AAD29719.1|AF143746_1|AF143746
CER1 {Oryza sativa} | chr5:10261017-10263283
FORWARD LENGTH=2267
Length=2267
Score = 292 bits (158), Expect = 7e-78
Identities = 201/222 (91%), Gaps = 1/222 (0%)
Strand=Plus/Plus
Query 569 CTGTGGTGCACCCCTTCGCCGAACACATCGCCTACTCACTACTCTTTGCCATACCCATGG 628
|||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
Sbjct 616 CTGTGGTGCACCCCTTCGCCGAGCACATCGCCTACTCAGTACTCTTCGCCATACCCATAG 675
Query 629 TAACGGCGTCCCTGTGTGGGATCCTCTCCATTGTTTCCATCATTGCATACATTACTTACA 688
|||||| |||||| ||||||||||||||||||||| || || |||||||| |||||||||
Sbjct 676 TAACGGTGTCCCTATGTGGGATCCTCTCCATTGTTCCCTTCGTTGCATACGTTACTTACA 735
Query 689 TTGACTTCATGAACAACATGGGACATTGTAACTTCGAGGTTTTCCCTAAGCGTCTCTTCC 748
|||||||||||||| | |||||||| | ||||||||| ||||||||||||||||||| |
Sbjct 736 TTGACTTCATGAACTATATGGGACACTACAACTTCGAGTTTTTCCCTAAGCGTCTCTTTC 795
Query 749 ACCTCTTCCCTCCCCTCAAGTTCCTCTGCTACACCCCCTCGT 790
| | ||||||| |||||||||||||||||||||||||||||
Sbjct 796 ATCA-TTCCCTCTCCTCAAGTTCCTCTGCTACACCCCCTCGT 836
Score = 202 bits (109), Expect = 1e-50
Identities = 215/263 (82%), Gaps = 20/263 (8%)
Strand=Plus/Plus
Query 316 GTGTACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCGCTCTTGGGACGACCAAATC 375
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 263 GTGGACAAGCCCATTGAGTTCGAGCAAGTGGACCGAGAGCAATCTTGGGACGACCAAATC 322
Query 376 ATCTTCAACACTCTCCTCATGTATCTCG-CAAACATCAAGCTCCCAGGC-GCCTCCCACC 433
||||||||||| ||| |||||||||||| ||| || ||| ||||||||| || || |
Sbjct 323 ATCTTCAACACGCTCTTCATGTATCTCGTCAA-CAACAAACTCCCAGGCTGC-TCGCGTA 380
Query 434 TTCCC-CCCTGGAGACTAG-ATGGAGC--CAT--C--CT-CATGGCTCTACTTCACGCTG 484
| ||| ||| | || | ||| || | | | || |||| || | | | || |
Sbjct 381 T-CCCTCCCAAGCCACCATCATGT-GCTTCTTTTCTACTTCATG-CTGTTC--C-CG-TC 433
Query 485 GAGTTCCTCTACTACTGGTTCCACAGAGCTCTCCACCACCATTTCCTCTACTCTCGCTAC 544
|||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 434 GAGTTCTTATACTACTGGTTCCACAGATCTCTCCACCACCACTTCCTCTACTCTCGTTAC 493
Query 545 CATTCTCACCACCATTCCTCCAT 567
|||||||||||||| ||||||||
Sbjct 494 CATTCTCACCACCACTCCTCCAT 516
> AT1G02205.3 | Symbols: CER1 | Fatty acid hydroxylase superfamily
| chr1:418748-422258 FORWARD LENGTH=2067
Length=2067
Score = 222 bits (120), Expect = 1e-56
Identities = 167/190 (88%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 675 ATACATTACT-TACATTGACTTCATGAACAACATGGGACATTGTAACTTCGAGGTTTTCC 733
||||| || | ||||| ||||||||||||||||||||||| || ||||||||| | |||
Sbjct 694 ATACA-TAATCTACATAGACTTCATGAACAACATGGGACACTGCAACTTCGAGCTAATCC 752
Query 734 CTAAGCGTCTCTTCCACCTCTTCCCTCCCCTCAAGTTCCTCTGCTACACCCCCTCGTTTC 793
||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| | |
Sbjct 753 CTAAGCGCCTTTTCCACCTCTTTCCTCCCCTCAAGTTCCTCTGTTACACCCCCTCATACC 812
Query 794 ACTCGCTCCACCACACGCAGTTCCGGACCAACTACTCTCTGTTCATGCCAATATACGACT 853
||||||| ||||||||||||||||||||||||||||| || |||||||| | || ||||
Sbjct 813 ACTCGCTGCACCACACGCAGTTCCGGACCAACTACTCCCTCTTCATGCCCTTGTATGACT 872
Query 854 ACATCTACGG 863
||||||||||
Sbjct 873 ACATCTACGG 882
> AT2G37700.1 | Symbols: | Fatty acid hydroxylase superfamily
| chr2:15810581-15814208 REVERSE LENGTH=1874
Length=1874
Score = 135 bits (73), Expect = 1e-30
Identities = 267/355 (75%), Gaps = 36/355 (10%)
Strand=Plus/Plus
Query 236 TGACGCTGTGGCGAATAGTTCACAGCCAGATATGGATCAGCGTGTCTCG---CCAGAGGA 292
||||| ||||||| || ||||| ||||| |||||||| || | || || ||| | |
Sbjct 178 TGACGGTGTGGCGGATTGTTCATAGCCAAATATGGATAAGTTTATCCCGTTACCA-A--A 234
Query 293 CGGCTAAGGGAACGAA-CAAGATCGTGTACAAGCCCATTGAGTTCGAGCAAGTGGACCGA 351
| || || ||||| || | |||| || ||||| |||| ||||| || ||||| ||||||
Sbjct 235 CTGCAAAAGGAACCAAGC-GGATCCTGAACAAGTCCATAGAGTTTGACCAAGTTGACCGA 293
Query 352 GAGCGCTCTTGGGACGACCAAATCATCTTCAACACTCTCCTCATGTAT-C-T--CGCAAA 407
|| || | |||||||| || |||||||||||||||||| | ||| | | | | ||||
Sbjct 294 GAACGAACCTGGGACGATCAGATCATCTTCAACACTCTCAT--TGTTTACTTAAC-CAAA 350
Query 408 CAT-CAAGCTCCCAGGCG-CCTCCCACC-TTCCCCCCTGGAG-ACTAGATGGAGCCATCC 463
| | | || |||| | || ||| ||||| |||| | || ||||||| || |
Sbjct 351 -GTGTACG-TCTCAGG-GACC-AGTACCATTCCCTTCTGGCGAAC-CGATGGAGTGAT-C 404
Query 464 TCA-TGGCTCTACTTCA--C--G--C--TGGAGTTCCTCTACTACTGGTTCCA-CAGAGC 513
| | | ||||| || || | | | |||||||| ||||||||||||| || | ||||
Sbjct 405 TTAGTCGCTCTCCTCCATGCTGGTCCGGTGGAGTTCATCTACTACTGGTTTCATC-GAGC 463
Query 514 TCTCCACCACCATTTCCTCTACTCTCGCTACCATTCTCACCACCATTCCTCCATT 568
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CCTTCACCACCACTTCCTCTACTCTCGCTACCATTCTCACCACCATTCCTCCATT 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105672147225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5