BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470049
Length=830
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02180.1 | Symbols: | ferredoxin-related | chr1:413522-4146... 1260 0.0
> AT1G02180.1 | Symbols: | ferredoxin-related | chr1:413522-414645
REVERSE LENGTH=918
Length=918
Score = 1260 bits (682), Expect = 0.0
Identities = 784/833 (94%), Gaps = 8/833 (1%)
Strand=Plus/Plus
Query 1 AATCCGCCAGCTTGAGCAATTTACGCAGGGAATTCAGAGGATAAAACACAAGA-ATGAAG 59
|||||||||||| |||| | |||||| |||||||||||||||||||||| || ||||||
Sbjct 90 AATCCGCCAGCTCGAGCTA-TTACGCTGGGAATTCAGAGGATAAAACAC--GATATGAAG 146
Query 60 AACGGAATTAGCTTTTTGAAGTCGATTTTACTGTTTCTATCACTCTCATCAGTGCTAGCT 119
|||| ||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 147 AACGAAATCAGCATTTTGGAGTTGATTTTACTGTTTCTGTCACTCTCATCAGTGCTAGCT 206
Query 120 AGCTCCAAATTGCACGGAAACCCAGCTCATGAAATGGTGAGCGTCTTGAACCAGAACAGA 179
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 207 AGCTCCAAATTGCACGGAAACTCAGCTCATGAAATGGTGAGCATCTTGAACCAGAACAGA 266
Query 180 ACAGCTCGGAAGCTCGGCAAACTAAATGAGAGTCCTGGTCTTGGCTGCATGGCCCTCCAG 239
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 267 ACAGCTCGGAAACTAGGCAAACTAAATGAGAGTCCCGGTCTTGGCTGCATGGCCCTCCAG 326
Query 240 TATGTTGAGCTCTGCGAGGGGAATTGCAATGTCAACAACACTCTCAGCTGTGACCCCCCT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 327 TATGTTGAGCTCTGCGAGGGGAATTGCAATGTCAACAACACTCTCAGCTGTGAACACCCT 386
Query 300 GAAGACGACTTCACTCAGGTGTTTGCCCCAAACTGTGGTGTAGAACTCCCCACTTTTGGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GAAGACGACTTCACTCAGGTGTTTGCCCCAAACTGTGGTGTAGAACTCCCCACTTTTGGT 446
Query 360 ACCATAACTGGCCATATCCTCGGCTGCAGCTCAAAGTATGCAGCCCCAGAAGTCACTTTC 419
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 447 ACCATAACTGGCCATATCCTCGGCTGCAGCTCTAAGTATGCAGCACCAGAAGTCGCTTTC 506
Query 420 TCAGACATTCTCTTTAGAGATAACAAAGCGTTGTCGGTGCTCAGAAACAGGTCGCATACC 479
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 507 TCAGACATTCTCTTTAGAGATAGCAGTGCGTTGTCGGTGCTCAGAAACAGGTCGCATACC 566
Query 480 GAGGTTGGAGTGGGAATGGCAAGGTTGCATAAAGGTACCTTCTTTTGGTGCCTTCTCTTT 539
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 567 GAGGTTGGAGTGGGAATGGCTAGGTTGCATAAAGGTACCTTCTTTTGGTGTCTTCTCTTT 626
Query 540 AGCGATGGTGTGACAAACACCTCATTTGCT-CTGGAAGATAACGGCCGGGGCATCAAACA 598
||||||||||||| |||| |||| |||| | |||||||||||||||||||| ||||||||
Sbjct 627 AGCGATGGTGTGAAAAACTCCTCCTTTG-TACTGGAAGATAACGGCCGGGGTATCAAACA 685
Query 599 AAGAAAAGGCTGCTACAGCGGAAGTGCTTTTCCTTGCAGCAGCAATGCATACATGATGTG 658
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 686 AAGAACAGGCTGCTACAGCGGAAGTGCTTTTCCTTGCAGCAGCAACGCACACATGATTTG 745
Query 659 TATGCGCCTACTGAACAGCTTTCTGGGACTTGTCTTGTCTTCCTTTTGTCTATTCGAGAA 718
||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 746 TATGCGCCTTCTGAACAGCTTTCTGGGACTTCTCTTCTCTTCCTTCTGTCTATTCGAGAA 805
Query 719 ACACCTTAAGTCTTGATTCTGAAAGGCAAACCATTTGCTTG-TTGTCTGTAAAGACTAAA 777
||||||||| | ||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 806 ACACCTTAAATTTTGATTCTGAAAGGCAAACCATTTGCT-GCTTGTTTGTAAAGACTAAA 864
Query 778 GAATAGATGGCACATTTTGTTATTGAATCACCAAATCAATGTTTTCCTTGATT 830
||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 865 GAATAGATGGCACATTTTGTTATCGAATCACCAAATCAATGTTTTCCTTTATT 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40438488335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5