BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470051

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02160.2 | Symbols:  | Cox19 family protein (CHCH motif) | c...   592    1e-168


> AT1G02160.2 | Symbols:  | Cox19 family protein (CHCH motif) | 
chr1:410748-411597 FORWARD LENGTH=567
Length=567

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 486/556 (87%), Gaps = 51/556 (9%)
 Strand=Plus/Plus

Query  1    CCATTAAGATATCTTCGCGGAa--------gagagagagagaCGGTGATCGGGAAATGGC  52
            ||||||||||||||||||||||        |||||||||||||||||||||||||||| |
Sbjct  1    CCATTAAGATATCTTCGCGGAATCGGTTGTGAGAGAGAGAGACGGTGATCGGGAAATGTC  60

Query  53   GACGAAAGGCGAGGCGGCGGCATACCCTAGCGCGGCTCGGATATCTGACTCTCCATGTTA  112
            ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct  61   GACGAAAGGCGCGGCGGCGGCGTACCCTAGCGCGGCTCGGATATCTGATTCTCCATGTTA  120

Query  113  TCTTCAGTACTCTGCTTCTCTCAAATGTCTTGAAGAATTTGGATCAGACAAGAGTAAATG  172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCTTCAGTACTCTGCTTCTCTCAAATGTCTTGAAGAATTTGGATCAGACAAGAGTAAATG  180

Query  173  CCAGGATCATTTTGATGTGTACAAGGAATGCAAGAAGAAAGAGGCT-TTG--GTG--T--  225
            |||||||||||||||||||||||||||||||||||||||||||| | |||  |||  |  
Sbjct  181  CCAGGATCATTTTGATGTGTACAAGGAATGCAAGAAGAAAGAGGTTGTTGTTGTGAATGA  240

Query  226  -T-TCCAA-CTT----C-T--C----TGCT--GC-GCTT-ACCTATGTGTTCTTTTGTTT  267
             | |  |  |||    | |  |    | ||  || |||| ||||||||||| ||||||||
Sbjct  241  ATATTTAGGCTTTTGGCGTTTCCAACTTCTTTGCTGCTTTACCTATGTGTTATTTTGTTT  300

Query  268  CTCAGAGGGAAGCTCGACTGGAACGCAATAAGACACGGTCGTTGTTCTCGTGAATGCAGA  327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CTCAGAGGGAAGCTCGACTGGAACGCAATAAGACACGGTCGTTGTTCTCGTGAATGCAGA  360

Query  328  TCCTCGAATACCAATGATGTCTCAGAACATCACCTAAGCTAGCAGTAGCCTGTTGTTTCA  387
            |||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct  361  TCCTCGAATACCAATGATGTCTCAGAACATCACCTA-GCTAGTAGTATCCTGTTGTTTCA  419

Query  388  ----CA-TG-CTGTGTTTGT-----CTA---A-GTAAACAAGTGGAAAGTGTTTGTTAAT  432
                || || ||||||||||     |||   | |||||||||||||||||||||||||||
Sbjct  420  TTTGCAATGGCTGTGTTTGTATGATCTATCTAAGTAAACAAGTGGAAAGTGTTTGTTAAT  479

Query  433  GTTACTTTTTACGCTCCATTGGTGA-TGGTGGATGGATACCTGTTAAACTTTGAGAGCAA  491
            |||||||||||| | |||||||||| |  ||| || ||||||||||||||||||||||||
Sbjct  480  GTTACTTTTTACTCCCCATTGGTGAATCATGG-TGTATACCTGTTAAACTTTGAGAGCAA  538

Query  492  GTGGTTAGTTAGTTAG  507
            ||||||| ||| ||||
Sbjct  539  GTGGTTATTTATTTAG  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5