BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470059
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02110.1 | Symbols: | Protein of unknown function (DUF630 a... 1914 0.0
AT3G60320.1 | Symbols: | Protein of unknown function (DUF630 a... 143 7e-33
> AT1G02110.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr1:392831-395528 FORWARD LENGTH=2314
Length=2314
Score = 1914 bits (1036), Expect = 0.0
Identities = 1148/1199 (96%), Gaps = 20/1199 (2%)
Strand=Plus/Plus
Query 1 ATGGGATGCACGGCCTCCAAGCTCGACAGTGAGGATGCTGTCCGTCGCTGCAAGGAGCGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 ATGGGATGCACGGCCTCCAAGCTCGACAGTGAGGATGCTGTCCGTCGCTGCAAGGAGCGG 168
Query 61 CGCCGTCTTATGAAGGACGCCGTCTACGCTCGTCACCATCTCGCCGCCGCTCACTCTGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CGCCGTCTTATGAAGGACGCCGTCTACGCTCGTCACCATCTCGCCGCCGCTCACTCTGAC 228
Query 121 TACTGCCGCTCCCTTCGTCTCACCGGCTCTGCCCTCTCCTCCTTCGCCTCCGGCGAGCCC 180
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 229 TACTGCCGCTCCCTTCGTCTCACTGGCTCTGCCCTCTCCTCCTTCGCCGCCGGCGAGCCC 288
Query 181 CTCTCCGTCTCCGAGAACACTCCCGCTGTTTTTCTCCGCCCTTCCTCCAGCCAGGACGCG 240
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 289 CTCTCCGTCTCCGAGAATACTCCCGCTGTTTTTCTCCGCCCTTCCTCCAGTCAGGACGCG 348
Query 241 CCACGTGTCCCTTCTTCCCATTCCACA-AAGCCCC-C-TCCGCCCATCCGCAGCAAGCCT 297
|||||||||||||||||||||||| || || |||| | ||||||||||||||||||||||
Sbjct 349 CCACGTGTCCCTTCTTCCCATTCCCCAGAACCCCCTCCTCCGCCCATCCGCAGCAAGCCT 408
Query 298 AAGCCTA---GG---AGG---CTTCCCCACATTCTCTCCGACTCCTCTCCTTCTTCCTCT 348
||||||| || ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 409 AAGCCTACTAGGCCTAGGAGGCTTCCACACATTCTCTCCGACTCCTCTCCTTCTTCCTCT 468
Query 349 CCGGCCACCTCTTTCTATCCCACTGCTCACCAGAACTCTACCTACTCTCGCTCTCCTTCT 408
|| |||||| |||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 469 CCTGCCACCAGTTTCTATCCCACTGCTCACCAGAACTCTACTTACTCTCGCTCTCCATCT 528
Query 409 CAAGCTTCCTCTGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGACTCTGAG 468
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 529 CAAGCTTCCTCTGTCTGGAACTGGGAGAATTTCTACCCTCCCTCTCCCCCCGACTCCGAG 588
Query 469 TTCTTCGAACGCAAAGCTCGCCAGAACCAGAAGCACCGTCCTCCTTCCGACTACGACGCC 528
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 589 TACTTCGAACGCAAAGCTCGCCAGAACCACAAGCACCGTCCTCCTTCCGACTACGACGCC 648
Query 529 GAAACTGAGAGATCCGACCACGATTACTTCCACTCCCGGAGAGATGCCGCCGAGGAAGTT 588
|||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 649 GAAACTGAAAGATCCGACCACGATTACTGCCACTCACGGAGAGATGCCGCCGAGGAAGTT 708
Query 589 CACTGCAGCGAGTGGGGCGACGACCACGACCGTTTCACTGCCACCTCTTCGTCCGACGGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CACTGCAGCGAGTGGGGCGACGACCACGACCGTTTCACTGCCACCTCTTCGTCCGACGGA 768
Query 649 GATGGGGAGGCCGAAACCCACGTTTCCAGATCCGGTATTGAAGAAGAAGAGCCTGTGAAA 708
|||||||||| |||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 769 GATGGGGAGGTCGAAACTCACGTTTCCAGATCCGGTATTGAAGAAGA-G--CCTGTGAAA 825
Query 709 CAAG-AG--CAAGACCCAAATGGCAAAGA-CAACTCTGACCATGTTACCACTTCTTCGGA 764
||| | |||||||||||||||||||| || |||||||||||||||||||||||| ||
Sbjct 826 CAACCACATCAAGACCCAAATGGCAAAGAGCA-CTCTGACCATGTTACCACTTCTTCCGA 884
Query 765 CTGCTACAAGACCAAATTGGTGGTAAGGCACAAGAATTTGAAGGAGATCCTCGACGCCGT 824
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 885 CTGCTACAAGACCAAATTGGTGGTAAGGCACAAGAATTTGAAGGAGATCCTTGACGCCGT 944
Query 825 TCAAGACTACTTCGACAAGGCTGCCTCCGCTGGGGACCAGGTCTCCGCCATGCTTGAGAT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TCAAGACTACTTCGACAAGGCTGCCTCCGCTGGGGACCAGGTCTCCGCCATGCTTGAGAT 1004
Query 885 CGGCCGGGCTGAGCTCGACCGCAGCTTCAGCAAGCTGAGGAAGACGGTGTATCATTCAAG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 CGGCCGGGCTGAGCTCGACCGCAGCTTCAGCAAGCTGAGGAAGACGGTGTATCATTCAAG 1064
Query 945 CAGTGTGTTCAGCAACTTGAGCGCAAGCTGGACCTCAAAACCCCCATTGGCAGTCAAATA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 CAGTGTGTTCAGCAACTTGAGCGCAAGCTGGACCTCAAAACCCCCATTGGCAGTCAAATA 1124
Query 1005 CAAGCTCGATGCATCTACCCTGAATGATGAACATGTCGGCCTCAGGAGCCTCTGCTCCAC 1064
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1125 CAAGCTCGATGCATCTACCCTGAATGATGAACAAGGCGGCCTCAAGAGCCTCTGCTCCAC 1184
Query 1065 TCTAGACCGACTCCTCGCTTGGGAGAAGAAGCTTTATGAGGATGTCAAGGCAAGAGAAGG 1124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1185 TCTAGACCGACTCCTCGCTTGGGAAAAGAAGCTTTATGAGGATGTCAAGGCAAGAGAAGG 1244
Query 1125 AGTTAAGATTGAGCACGAGAAGAAGCTGTCTGCGCTGCAGAGTCAGGAGTACAAGGGAG 1183
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1245 AGTTAAGATTGAGCACGAGAAGAAGCTGTCTGCGCTGCAGAGTCAGGAGTATAAGGGAG 1303
Score = 1441 bits (780), Expect = 0.0
Identities = 834/861 (97%), Gaps = 0/861 (0%)
Strand=Plus/Plus
Query 1182 AGAAGCTGTTTTGACCACGTCTAATGCCATTCTCCGCCTCCGGGACACTGACCTTGTCCC 1241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGAAGCTGTTTTAACCACGTCTAATGCCATTCTCCGCCTCCGGGACACTGACCTTGTCCC 1433
Query 1242 TCAACTTGTTGAACTCTGCCACGGATTAATGTACATGTGGAAGTCAATGCACGAGTACCA 1301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1434 TCAGCTTGTTGAACTCTGCCACGGATTAATGTACATGTGGAAGTCAATGCACGAGTATCA 1493
Query 1302 CGAAATCCAGAACAACATCGTGCAACAAGTCCGTGGCCTGATCAACCATACAGAGAAAGG 1361
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1494 CGAAATCCAGAACAACATCGTGCAACAAGTCCGTGGCCTGATCAACCAAACAGAGAGAGG 1553
Query 1362 TGAGTCAACATCAGAGGTACACCGGCAGGTGACGCGGGACCTAGAATCAGCTGTCTCCTT 1421
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1554 TGAGTCAACATCAGAGGTACACCGGCAGGTGACGCGGGACCTAGAGTCAGCTGTGTCCTT 1613
Query 1422 GTGGCATTCGAGCTTCTGTCGCATCATCAAATTCCAGAGGGAGTTCATATGCTCTCTCCA 1481
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1614 GTGGCATTCGAGCTTCTGTCGCATCATTAAATTCCAGAGGGAGTTCATATGCTCTCTCCA 1673
Query 1482 CGCCTGGTTCAAGCTCAGTCTTGTTCCCCTGAGCAACGAAGACCCAAAGAAAGAGCGGCC 1541
||| ||||||||||| || || |||||||||||||||| ||||||||||||| |||||||
Sbjct 1674 CGCATGGTTCAAGCTGAGCCTGGTTCCCCTGAGCAACGGAGACCCAAAGAAACAGCGGCC 1733
Query 1542 AGAGTCATTTGCCTTGTGCGAGGAGTGGAAGCAGAGCCTGGAACGGGTGCCTGACACAGT 1601
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 AGACTCATTTGCCTTGTGCGAGGAGTGGAAGCAGAGCCTGGAACGGGTGCCTGACACAGT 1793
Query 1602 GGCGTCAGAAGCCATAAAGAGCTTTGTAAACGTGGTCCATGTCATATCAATAAAGCAGGC 1661
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1794 GGCGTCAGAAGCCATAAAGAGCTTTGTAAACGTGGTACATGTGATATCAATAAAGCAGGC 1853
Query 1662 GGAAGAGGTGAAGATGAAGAAACGCACGGAGAGTGCAGGAAAGGAGCTGGAGAAGAAAGC 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 GGAAGAGGTGAAGATGAAGAAACGCACGGAGAGTGCAGGAAAGGAGCTGGAGAAGAAAGC 1913
Query 1722 ATCCTCACTAAGGAGCATAGAGAGGAAGTACTACCAGGCTTACTCGACGGTTGGGATAGG 1781
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1914 ATCCTCACTGAGGAGCATAGAGAGGAAGTACTACCAGGCATACTCGACGGTTGGGATAGG 1973
Query 1782 CCCTGGACCGGAGGTGTTGGACGCACGGGACCCGCTTTCTGAGAAGAAATGTGAGCTGGC 1841
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1974 CCCTGGACCGGAGGTGTTGGACTCACGGGACCCGCTATCTGAGAAGAAATGTGAGCTGGC 2033
Query 1842 GGCATGTCAGAGGCAGGTGGAAGATGAGGTAATGAGGCACGTGAAGGCTGTGGAGGTGAC 1901
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2034 GGCATGTCAGAGGCAGGTGGAGGATGAGGTAATGAGGCACGTGAAGGCTGTGGAGGTGAC 2093
Query 1902 ACGAGCTATGACTCTCAACAATCTGCAAACCGGCCTGCCCAATGTATTCCAGGCCTTGAC 1961
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2094 ACGAGCTATGACTCTCAACAATCTACAAACCGGCCTGCCCAATGTATTCCAGGCCTTGAC 2153
Query 1962 CAGCTTCTCATCTCTCTTCACTGAATCCCTACAGACTGTTTGTTCTCGTTCCTACTCCAT 2021
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 2154 CAGCTTCTCATCTCTCTTCACTGAATCTCTCCAGACTGTCTGTTCTCGTTCCTACTCCAT 2213
Query 2022 CAACTGATTATGGCCAAGTTT 2042
|||||||||||| ||||||||
Sbjct 2214 CAACTGATTATGTCCAAGTTT 2234
> AT3G60320.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr3:22291886-22295371 REVERSE LENGTH=2721
Length=2721
Score = 143 bits (77), Expect = 7e-33
Identities = 113/130 (87%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 360 TTTCTATCCCACTGCTCACCAGAACTCTACCTACTCTCGCT-CTCCTTCTCAAGCTTCCT 418
||| ||||||| |||| | ||||||||||| ||||| |||| |||||||||| || ||||
Sbjct 617 TTTGTATCCCAGTGCTTATCAGAACTCTACTTACTC-CGCTACTCCTTCTCATGCCTCCT 675
Query 419 CTGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGACTCTGAGTTCTTCGAAC 478
| ||||||||||||||||||||||||||||||||||||||||| || || |||||| |||
Sbjct 676 CCGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGATTCCGAATTCTTC-AAC 734
Query 479 -GCAAAGCTC 487
| || ||||
Sbjct 735 AGGAAGGCTC 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101204298720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5