BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470065
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02090.1 | Symbols: FUS5, CSN7, COP15, ATCSN7 | Proteasome c... 1465 0.0
> AT1G02090.1 | Symbols: FUS5, CSN7, COP15, ATCSN7 | Proteasome
component (PCI) domain protein | chr1:387277-389647 REVERSE
LENGTH=1064
Length=1064
Score = 1465 bits (793), Expect = 0.0
Identities = 889/936 (95%), Gaps = 4/936 (0%)
Strand=Plus/Plus
Query 1 GGAAGATGGATATCGAGCAGAAGCAAGCCGAGATCATTGATCAGCTCGTCAAACGAGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 75 GGAAGATGGATATCGAGCAGAAGCAAGCCGAGATCATTGATCAGCTCGTGAAGCGAGCTT 134
Query 61 CTACTTGCAAACCCGAGGCTCTCGGTCCTCTCATCATCGAAGCCACATCGCATCCTTCTC 120
||||||||||| |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 135 CTACTTGCAAATCCGAGGCTCTGGGCCCGCTCATCATCGAAGCCACATCGCATCCTTCTC 194
Query 121 TCTTCGCCTTCTCCGAGATTTTGGCTCTACCCACTGTTACCCAGCTTCAAGGAACCACAG 180
||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 195 TCTTCGCCTTCTCCGAGATTTTGGCTCTACCCAATGTTGCCCAGCTTGAAGGAACCACAG 254
Query 181 ATTCTGTGTACCTGGATGTACTGCGGTTGTTTGCCCATGGCACCTGGGGTGACTACAAAT 240
||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||
Sbjct 255 ATTCTGTGTACCTGGATCTACTACGCTTGTTTGCCCATGGCACCTGGGGAGACTACAAAT 314
Query 241 GCAATGCTTCCCGTATTCCTCAGTTGTCCCCTGACCAAATTCTCAAGCTAAAGCAGCTCA 300
||||||| ||||| |||| || |||||||||||||||||||| ||||| ||||||||||
Sbjct 315 GCAATGCCACCCGTCTTCCGCACTTGTCCCCTGACCAAATTCTTAAGCTTAAGCAGCTCA 374
Query 301 CTGTGCTCACCCTTGCTGAGTCTAACAAGGTATTGCCCTATGATACACTCATGGTCGAGT 360
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 375 CTGTCCTCACCCTTGCTGAGTCTAACAAGGTATTGCCCTATGATACACTAATGGTCGAGT 434
Query 361 TAGATGTTACCAATGTTCGCCAACTCGAGGACTTTCTTATCAATGAATGCATGTACGCGG 420
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 435 TAGATGTTTCCAATGTTCGCGAACTCGAGGACTTTCTTATCAATGAATGCATGTATGCGG 494
Query 421 GTATAGTTAGAGGG-AAACTTGATCAGTTAAAAAGATGTTTTGAGGTTCCGTTTGCAGCT 479
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 495 GTATAGTTAG-GGGAAAACTGGATCAGTTAAAAAGATGTTTTGAGGTTCCGTTTGCAGCT 553
Query 480 GGTAGGGATCTAAGGCCAGGACAACTTGGGAATATGTTAGACACATTGTCCAACTGGTTG 539
|||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 554 GGTAGGGATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTGGTTG 613
Query 540 AATACGTCAGAGAATCTGCTCATTTCAATTCAAGACAAGATCAAATGGGCAGACAGTATG 599
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 614 AACACGTCAGAGAATCTGCTCATTTCAATTCAAGACAAGATCAAATGGGCGGACAATATG 673
Query 600 AGTGAGATGGACAAAAAACATCGTAAGGAAGCAGAAGAAGGGGTGGAAGAAGTGAAGAAG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AGTGAGATGGACAAAAAACATCGTAAGGAAGCAGAAGAAGGGGTGGAAGAAGTGAAGAAG 733
Query 660 TCTCTGTCCATGAAGGGGGATGTTGACATCAGAGGGAATAAGGAGATGTTTGGGGAACCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TCTCTGTCCATGAAGGGGGATGTTGACATCAGAGGGAATAAGGAGATGTTTGGGGAACCA 793
Query 720 AGTGGAGTGATGGACTACGAAGAAGATGGGATCCGACCAAAGAGGAGGAGGCATCCGGTA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 794 AGTGGAGTGATGGACTACGAAGAAGATGGGATCCGACCAAAGAGGAGGAGGCATCCTGTA 853
Query 780 ACAAGGTAGAGGAGCGAGCGAGAGCAAATGGTCAGTGTGGACTGACATTCCATTTACCGA 839
||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 854 ACAAGGTAGAGGAGCAAGAGAGAGCAAATGGTCAGTGCGGATTGACATTCCATTTACCGA 913
Query 840 GAGTAGATTATGATGATTTTGATGGCGGATCTTTCAACTTGTAGAAAATCCTCTGTTCTC 899
|||||||||||||| |||| | || ||||| |||||||||||| || |||||||||||||
Sbjct 914 GAGTAGATTATGATTATTTGGTTG-CGGAT-TTTCAACTTGTATAAGATCCTCTGTTCTC 971
Query 900 TCTCACAATAACCCCTTGTTATGTTTGTTTTCCCTC 935
||||||||||||||||||||||||||| ||||||||
Sbjct 972 TCTCACAATAACCCCTTGTTATGTTTGATTTCCCTC 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5