BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470066

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02070.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   660    0.0  


> AT1G02070.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G60520.1); 
Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:370257-370967 
REVERSE LENGTH=604
Length=604

 Score =  660 bits (357),  Expect = 0.0
 Identities = 488/550 (89%), Gaps = 13/550 (2%)
 Strand=Plus/Plus

Query  1    ATCATGGAGAGAGTATGTTGCATGTGCGGCGACGTCGGTTTCTCCGACAAGCTCTTCAGC  60
            |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct  18   ATCATGGAGAGAGTGTGTTGCATGTGCGGTGATGTCGGTTTCTCCGACAAGCTCTTCAGC  77

Query  61   TGCGGGCACTGCCGATGCCGCTTACAGCACTCTTATTGTAGCAACTACTACAGCGAGTTT  120
            ||||| |||||||| |||||||| || |||||||||||||||||||||||| || |||||
Sbjct  78   TGCGGTCACTGCCGCTGCCGCTTCCAACACTCTTATTGTAGCAACTACTACGGCCAGTTT  137

Query  121  GCGGAGCCTGCCGAGATTTGCGACTGGTGCCGCAGCGACGACCGGAAGCTGGGAAACGTT  180
            ||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  138  GCGGAGCCTACCGAGATTTGCGACTGGTGCCGCAGCGACGACCGGAAGCTGAGCAACGTT  197

Query  181  GCTAGACATGGCGGCTCTTCTTCAAAGAAGTCTTCTTCTTCCGTTAATTATGAAAATGAT  240
            |||||||||||||| ||||||||||||||| |||||||||| ||||| |||| |||  ||
Sbjct  198  GCTAGACATGGCGGTTCTTCTTCAAAGAAGCCTTCTTCTTCGGTTAAATATG-AAA--AT  254

Query  241  GAGTTCACAAACCGACCGGACTATTCGTCCGGCC-GCGAGATCAATCATAACAATAACCA  299
            || ||| ||||| || |||| |||||| ||||||  || |||||| ||||||||||||| 
Sbjct  255  GACTTCTCAAACAGATCGGAATATTCGCCCGGCCACCG-GATCAAGCATAACAATAACCG  313

Query  300  TCATGGTCAAGTGGCCGAA-GGCGTTGCCGGAGCTGGAGGCGGAGTGCCGTCGCCTAAGA  358
            ||| | |||||| ||| || |||||||| |||| ||||||||||||  ||||||||||||
Sbjct  314  TCACGATCAAGTAGCC-AAGGGCGTTGCTGGAGATGGAGGCGGAGTTACGTCGCCTAAGA  372

Query  359  CGGCCACACGAAGGTACAAGCTTCTCAAAGATGTCATGTGTTAGTTTAAACTGA-CGAAA  417
            ||||||||||||||||||||||||||||||||||||||||||||||  | || | ||| |
Sbjct  373  CGGCCACACGAAGGTACAAGCTTCTCAAAGATGTCATGTGTTAGTTCCACCTAAACGAGA  432

Query  418  GGTATTAGAAAAATTAGTTATAATAATATTACTCTTTGGAGAATGTGTGATTAAATTATG  477
            |||||||||| | ||| | ||||| ||| |||||||| |||| |||||||||||||||||
Sbjct  433  GGTATTAGAAGACTTACT-ATAATCATACTACTCTTTCGAGACTGTGTGATTAAATTATG  491

Query  478  TATAAATTAGCCACTACGGAGAGAACaaaaaaaaaaaaaaaaGCGTCTTTGTTTGTTTTC  537
            ||||| ||||  |||||||||||| ||||  |||||| |||| |||| ||||||||||||
Sbjct  492  TATAA-TTAG--ACTACGGAGAGAGCAAATTAAAAAAGAAAA-CGTCGTTGTTTGTTTTC  547

Query  538  ATCCTTTTTT  547
            ||||||||||
Sbjct  548  ATCCTTTTTT  557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26222224734


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5