BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470069
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02065.1 | Symbols: SPL8 | squamosa promoter binding protein... 1509 0.0
> AT1G02065.1 | Symbols: SPL8 | squamosa promoter binding protein-like
8 | chr1:365209-367340 FORWARD LENGTH=1609
Length=1609
Score = 1509 bits (817), Expect = 0.0
Identities = 1183/1341 (88%), Gaps = 100/1341 (7%)
Strand=Plus/Plus
Query 60 aaaaaaaaaTGAA--TTAAAAAGGGACATTTAagagagatggt--gagagagagcaatag 115
||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||
Sbjct 92 AAAAAAAAATGAATTTTAAAAAGGGACCTTTAAGAGAGATGGTGGGAGAGAGAGCAAT-- 149
Query 116 agagagagagaAGGAGCTCCA--CCCACAAATAGAAAAGTTAGGGTTTACTGGAAAGAAA 173
||||||||||||| |||| ||||||||||| |||||||||||||| |||||| |||
Sbjct 150 --AGAGAGAGAAGGAAATCCACCCCCACAAATAG-AAAGTTAGGGTTTATTGGAAAAAAA 206
Query 174 G-AA-AGA---------------TGATTCTAATAGAGGTGTAGTACGTCGCTTTGCTTTC 216
| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 207 GAAAGAGAGTGTGTCTCTGTGTGTGATTCTAATAGAGGTGTAGTACGTCGCTTTGCTTTC 266
Query 217 AGTCCATTAAAACCATTCCATAACCTATTCCGCACCGACATGTCTCCTCTCCCC-TTCCT 275
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 267 AGTCCATTAAAACCATTCCATAACCTATTCCGCACCGACATGTCTCCTC-CCCCTTTCCT 325
Query 276 TTATTAG-----C-CTCTCTTTTT-A-TA----------A----ACAAA-TTAA-AAAGA 311
||||||| | |||||||||| | || | | ||| || |||||
Sbjct 326 TTATTAGCCTCTCTCTCTCTTTTTCACTACTCCGTCTTGATTTTATAAACAAAAGAAAGA 385
Query 312 AAGAGAGAGAGATCTTCCTCGGGATTGCAACATGCTGGACTACGAATGGGATAATCCTTC 371
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 386 AAGAGAGAGAGATCTTCCTCGGGATTGCAACATGTTGGACTACGAATGGGATAATCCTTC 445
Query 372 CTCGC-TTGTTCTCTCCGGAGATGAAAGAAACCCGGACTCTGACCCGACGACCCGATCCT 430
||| | | ||||||||||||||||||||||||||||||||||| || ||||||| || |
Sbjct 446 CTC-CATCGTTCTCTCCGGAGATGAAAGAAACCCGGACTCTGA-CC--CGACCCGGTCAT 501
Query 431 CCCTCTCCTTTTTCGACCCCGTCTCTCATTACAACAACGACCACCGCCACATCACCATTT 490
|| ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 502 CCTTCTCCTTTTTCGACCCCATCTCCCATTACAACAACGACCACCGTCACATCACCATTT 561
Query 491 CTCCTCCCCTCCTCTCTTCCTTCTCTAA-TAACCAGCAGCAACATCACCTCACCCTCTAC 549
|||||||||||||||||||||||||||| || || || || ||||||||||||||||||
Sbjct 562 CTCCTCCCCTCCTCTCTTCCTTCTCTAACCAA-CAACAACAGCATCACCTCACCCTCTAC 620
Query 550 GGTCAGAGCAGCAGCAACAA-CAACCTGTT-GT--T--TCATCATCATCA--CC-TGTAC 600
||||||| || ||||||||| || | || | | ||||| || || || |||||
Sbjct 621 GGTCAGACCAACAGCAACAACCAGTTTCTTCATCATCACCATCACCACCACTCCTTGTAC 680
Query 601 --G-AC-CCACGCACCACCACTCCTTACGGCGCCTCCGATCCCATGTACCATCCCCACTC 656
| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 681 GGGTCCACCAC-CACCACCACTCCTTACGGCGCCTCCGATCCCATCTACCATCCCCACTC 739
Query 657 TTCCGCT---CCAGCCTCCTTGTTCTCCTACGA-C---CA-GA-C---CTCGGGATCCGG 704
||||||| ||||||||||||||||||||||| | || || | ||||||||||||
Sbjct 740 TTCCGCTCCGCCAGCCTCCTTGTTCTCCTACGACCAGACAGGACCGGGCTCGGGATCCGG 799
Query 705 ATCTTCCTACAACTTCCTCATCCCCAAGACAGAAGTGGATTTCACGTCCAACAGGATCGG 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 ATCTTCCTACAACTTCCTCATCCCCAAGACAGAAGTGGATTTCACGTCCAACAGGATCGG 859
Query 765 GCTGAATCTGGGAGGCCGTACGTACTTCTCAGCCGCGGACGACGACTTCGTGAGCAGGCT 824
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 860 GCTGAACCTGGGAGGCCGTACGTACTTCTCAGCGGCGGACGACGACTTCGTGAGCAGGCT 919
Query 825 GTACAGGAGGTC-CAGACCAGGTGAGTCAGGGATGGGGAACTCGCTGAGCACGCCGCGGT 883
||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 920 ATACAGGAGGTCTC-GACCAGGTGAGTCAGGGATGGCGAACTCGCTGAGCACGCCGCGGT 978
Query 884 GCCAAGCCGAGGGATGCAACGCGGATCTGAGCCACGCGAAGCACTACCACCGCCGGCACA 943
||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 979 GCCAAGCAGAGGGATGCAACGCGGATCTGAGCCACGCGAAACACTACCACAGAAGGCACA 1038
Query 944 AAGTGTGCGAATTCCACTCAAAAGCATCGACGGTTGTAGCCGCCGGACTAAGCCAGAGGT 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1039 AAGTGTGCGAATTCCACTCAAAAGCATCGACGGTTGTAGCCGCCGGACTAAGCCAAAGGT 1098
Query 1004 TTTGCCAGCAGTGCAGCAGGTTCCATTTGCTGTCGGAATTCGACAACGGGAAACGGAGCT 1063
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TTTGCCAGCAATGCAGCAGGTTCCATTTGCTGTCGGAATTCGACAACGGGAAACGGAGCT 1158
Query 1064 GCCGTAAGCGACTTGCTGACCATAACCGCCGCCGCCGTAAATGTCACCAATCTGCCTCCG 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1159 GCCGTAAGCGACTTGCTGACCATAACCGCCGCCGCCGTAAATGTCACCAATCAGCCTCCG 1218
Query 1124 CCACCCAAGACGCCG-C-C----AAGCCAACTCCAAAGTCACCGAAGGATTCTGGTGTAA 1177
||||||||||| ||| | | ||| | ||||||||||||||||| ||||| ||||| |
Sbjct 1219 CCACCCAAGACACCGGCACCGGCAAGACTACTCCAAAGTCACCGAACGATTCGGGTGTTA 1278
Query 1178 AAGCGTC-TCCGTCGCCGTC--C-AACGCGCCGACTACGATATCACTGGAGTGCTTCCGG 1233
||||||| || ||| ||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 1279 AAGCGTCATC-GTCACCGTCGTCCAACGCGCCGCCTACGATATCACTGGAGTGCTTCCGG 1337
Query 1234 CAAAGGCAGTTCCAAACGACAGCGTCGTCTTCCACGTCAGCGTCTTCCTCCTCAAATTCA 1293
|||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||
Sbjct 1338 CAAAGGCAGTTCCAAACGACAGCGTCTTCATCCACGTCAGCGTCTTCGTCTTCAAATTCA 1397
Query 1294 ATGTTTTTCTCAACCGGATAG 1314
||||||||||| | |||||||
Sbjct 1398 ATGTTTTTCTCCAGCGGATAG 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5