BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470071
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02050.1 | Symbols: LAP6 | Chalcone and stilbene synthase fa... 2198 0.0
AT4G00040.1 | Symbols: | Chalcone and stilbene synthase family... 887 0.0
> AT1G02050.1 | Symbols: LAP6 | Chalcone and stilbene synthase
family protein | chr1:359117-360518 REVERSE LENGTH=1312
Length=1312
Score = 2198 bits (1190), Expect = 0.0
Identities = 1259/1292 (97%), Gaps = 5/1292 (0%)
Strand=Plus/Plus
Query 1 TTTGCTAATATTCTGCATCCACCATCTTTCTTCCCAATATCTTATTGAGTTTTTTCCTTC 60
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3 TTTGCTGATATTCTGCATCCACCATCTTTCTTCCCAATATCTAATTGAGTTTTTTCCTTC 62
Query 61 TGCGCTTGAAAA-AAGATGTCGAATTCTAGAATGAATGGTGTTGAGAAGCTAAGCAGCAT 119
|||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 63 TGCGCTTGAAAAGAA-ATGTCGAATTCTAGGATGAATGGTGTTGAGAAGCTAAGCAGCAA 121
Query 120 ATCCACAAGGCGTGTCGCAAATCCCAGAAAGGCAACACTGCTTGCTCTTGGCAAAGCCTT 179
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 122 ATCCACAAGGCGTGTCGCAAATGCCGGAAAGGCAACACTGCTTGCTCTTGGCAAAGCCTT 181
Query 180 CCCAAGCCAAGTCGTTCCTCAGGAGAATCTAGTGGAAGGATTTCTACGAGACACCAAATG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CCCAAGCCAAGTCGTTCCTCAGGAGAATCTAGTGGAAGGATTTCTACGAGACACCAAATG 241
Query 240 TGATGACGCGTTTATCAAAGAAAAGTTGGAACACTTGTGCAAAACCACAACCGTGAAGAC 299
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 242 TGATGACGCGTTTATCAAAGAAAAGCTGGAACACTTGTGCAAAACGACAACCGTGAAGAC 301
Query 300 GCGCTACACGGTATTGTCACGAGAGATACTGGATAAATACCCTGAGCTAACAACAGAGGG 359
||| ||||| || ||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 302 GCGATACACTGTGTTGACGCGAGAGATACTGGCTAAATACCCTGAGCTAACAACAGAGGG 361
Query 360 TTCACCAACAATCAAGCAAAGACTTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCATT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTCACCAACAATCAAGCAAAGACTTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCATT 421
Query 420 GGAAGCCAGTTTAGGTTGCATCAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCACAT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GGAAGCCAGTTTAGGTTGCATCAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCACAT 481
Query 480 TGTCTACGTTTCCTCAAGCGAGATCCGATTACCCGGTGGTGACCTTTACCTCTCAGCAAA 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 482 TGTCTACGTTTCCTCAAGCGAGATCCGTTTACCCGGTGGTGACCTTTACCTCTCAGCAAA 541
Query 540 GCTAGGCCTGAGGAATGACGTGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GCTAGGCCTGAGGAATGACGTGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGG 601
Query 600 TGTGACTGGCCTCCGTGTGGCCAAAGACATTGCTGAGAACAACCCGGGAAGCCGTGTTCT 659
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 602 TGTGACTGGCCTCCGTGTGGCCAAAGACATTGCTGAGAACAACCCCGGAAGCCGTGTTCT 661
Query 660 GCTCACAACCTCTGAAACCACCATTCTCGGGTTTCGCCCACCAAACAAAGCTCGTCCGTA 719
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 662 GCTCACAACCTCTGAAACCACCATTCTCGGATTTCGGCCACCAAACAAAGCGCGTCCGTA 721
Query 720 CGACCTAGTTGGAGCTGCTCTGTTTGGAGATGGTGCAGCTGCTGTAATCATCGGAGCTGA 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 722 CGACCTAGTTGGAGCTGCTCTGTTTGGAGATGGTGCAGCTGCTGTGATCATCGGAGCTGA 781
Query 780 TCCGAGAGAGTGTGAAGCTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTCTTGCC 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 CCCGAGAGAGTGTGAAGCTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTCTTGCC 841
Query 840 GGGGACACAGAACGTGATCGACGGGAGGTTGACGGAGGAAGGCATAAACTTCAAGCTTGG 899
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 842 GGGGACACAGAACGTGATCGAGGGGAGGTTGACTGAGGAAGGCATAAACTTCAAGCTTGG 901
Query 900 ACGAGACCTCCCGCAGAAGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCTGATGGG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ACGAGACCTCCCGCAGAAGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCTGATGGG 961
Query 960 AAAGGCTGGTGGCGATGAGTCGATGGAGTTCAATGACATGTTCTGGGCAGTTCATCCAGG 1019
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 962 AAAGGCTGG---CGATGAGTCGATGGAGTTCAATGACATGTTCTGGGCTGTTCATCCAGG 1018
Query 1020 AGGACCTGCGATTCTGAACCGTCTGGAGACAAAACTAAAGCTGGAGAAAGAGAAGCTGGA 1079
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 AGGACCTGCGATTCTGAACCGTCTGGAGACAAAACTGAAGCTGGAGAAAGAGAAGCTGGA 1078
Query 1080 GAGCAGCAGAAGGGCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTGTATGT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAGCAGCAGAAGGGCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTGTATGT 1138
Query 1140 GATGGAGTATATGAGAGAGGAGCTGAAGAAGAAAGGTGACGCAGCACAAGAGTGGGGACT 1199
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GATGGAGTATATGAGAGATGAGCTGAAGAAGAAAGGTGACGCAGCACAAGAGTGGGGACT 1198
Query 1200 TGGCTTAGCTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCATCCGCAGCCTCACCTC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGCTTAGCTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCATCCGCAGCCTCACCTC 1258
Query 1260 TCCCTAATTGTCATAATTTACATTTGGGTTAT 1291
| ||||||||| ||||||||||||||||||||
Sbjct 1259 TTCCTAATTGTTATAATTTACATTTGGGTTAT 1290
> AT4G00040.1 | Symbols: | Chalcone and stilbene synthase family
protein | chr4:14627-16079 FORWARD LENGTH=1366
Length=1366
Score = 887 bits (480), Expect = 0.0
Identities = 912/1117 (82%), Gaps = 43/1117 (4%)
Strand=Plus/Plus
Query 148 AAGGCAACACTGCTTGCTCTTGGCAAAGCCTTCCCAAGCCAA-GTCG-TTCCTCAGGAGA 205
||||| ||| |||||||||| || || ||||| || || ||| || | |||| |||||||
Sbjct 78 AAGGCGACAGTGCTTGCTCTCGGTAAGGCCTTGCCGAG-CAATGTTGTTTCC-CAGGAGA 135
Query 206 ATCTAGTGGAAGGA-TTTCTACGAGACACCAAATGTGATGACGCGTT-TATCAAAGAAAA 263
|||| |||| |||| | ||| || || | |||||| ||| || | || ||||||||| ||
Sbjct 136 ATCTCGTGG-AGGAGTATCTCCGTGAAATCAAATGCGATAAC-CTTTCTATCAAAGACAA 193
Query 264 GTTGGAACACTTGTGCAAAACCACAACCGTGAAGACGCGCTACACGGT-ATTGTCACGAG 322
| || ||||||||||||||| |||||| || ||||| |||||||| || | ||||||| |
Sbjct 194 GCTGCAACACTTGTGCAAAAGCACAACTGTCAAGACACGCTACACAGTCA-TGTCACGGG 252
Query 323 AGATACTGGATAAATACCCTGAGCTAACAACAGAGGGTTCACCAACAATCAAGCAAAGAC 382
||| ||| | ||||||||||| ||| |||| |||||||| ||||| ||||| || || |
Sbjct 253 AGACGCTGCACAAATACCCTGAACTAGCAACCGAGGGTTCCCCAACCATCAAACAGAGGC 312
Query 383 TTGAAATTGCAAACGAGGCGGTTGTGGAAATGGCAT-TGGAAGCCAGTTTAGG-TTGCAT 440
|||| ||||||||||| ||||||||| | ||||||| | ||||| || || || ||||||
Sbjct 313 TTGAGATTGCAAACGATGCGGTTGTGCAGATGGCATAT-GAAGCGAGCTT-GGTTTGCAT 370
Query 441 CAAGGAATGGGGAAGGCCAGTGGAAGACATCACTCA-CATTGTCTACGTTTCCTCAAGCG 499
|||||||||||||||| |||||||||| |||||||| | |||||||||||||||| || |
Sbjct 371 CAAGGAATGGGGAAGGGCAGTGGAAGATATCACTCATC-TTGTCTACGTTTCCTCCAGTG 429
Query 500 AGATCCGATTACCCGGTGGTGACCTTTACCTCTCAGCAAAGCTAGGCCTGAGGAATGACG 559
|| |||| || ||||| ||||| ||||||||||| ||| |||| ||||| || || || |
Sbjct 430 AGTTCCGTTTGCCCGGAGGTGATCTTTACCTCTCGGCACAGCTGGGCCTTAGCAACGAGG 489
Query 560 TGAACAGAGTGATGCTGTATTTTCTGGGATGCTACGGAGGTGTGACTGGCCTCCGTGTGG 619
| | |||||||||||||||||||| |||||||| |||||| ||| ||| || || ||||
Sbjct 490 TTCAGAGAGTGATGCTGTATTTTCTTGGATGCTATGGAGGTTTGAGTGGGCTGCGCGTGG 549
Query 620 CCAAAGACATTGCTGAGAACAACCC-GGGAAGCCGTGT-TCTGCTCACAACCTCTGAAAC 677
||||||||||||||||||||||||| |||| ||||||| | ||||||| |||||||| ||
Sbjct 550 CCAAAGACATTGCTGAGAACAACCCAGGGA-GCCGTGTGT-TGCTCACCACCTCTGAGAC 607
Query 678 CACCATTCTCGGGTTTCGCCCACCAAACAAAGCTCGTCCGTACGACCTAGTTGGAGCTGC 737
||| |||| ||||| |||||||| |||||||||||||| ||| || |||| || |||||
Sbjct 608 TACCGTTCTGGGGTTCCGCCCACCCAACAAAGCTCGTCCTTACAACTTAGTCGGGGCTGC 667
Query 738 TCTGTTTGGAGATGGTGCAGCTGCTGTAATCATCGGAGCTGATCCGAGAGAGT-GTGAAG 796
|| ||||||||||| |||||||| | ||||||||||| || || | ||||| | |||
Sbjct 668 ACTCTTTGGAGATGGAGCAGCTGCCCTGATCATCGGAGCAGACCCTACAGAGTCG-GAAT 726
Query 797 CTCCTTTCATGGAGCTGCACTATGCGGTTCAGCAGTTCTTGCCGGGGACACAGAACGTGA 856
|||||||||||||||| |||| ||| | ||||||||| |||| |||||| ||||
Sbjct 727 CTCCTTTCATGGAGCTTCACTGTGCTATGCAGCAGTTCCTGCCCCAAACACAGGGGGTGA 786
Query 857 TCGACGGGAGGTTGACGGAGGAAGGCATAAACTTCAAGCTTGGACGAGACCTCCCGCAGA 916
|||||||| || || | || || ||||||| ||||||||| ||| |||||||||| ||||
Sbjct 787 TCGACGGGCGGCTGTCAGAAGAGGGCATAACCTTCAAGCTAGGAAGAGACCTCCCTCAGA 846
Query 917 AGATAGAGGAGAACATAGAAGAGTTCTGCAAGAAGCT-GATGGGAAAGGCTGG-TGGCGA 974
|||| || || ||| | || ||||||||||||||||| | ||| ||||||||| | |
Sbjct 847 AGATCGAAGACAACGTGGAGGAGTTCTGCAAGAAGCTAG-TGGCAAAGGCTGGCT--C-- 901
Query 975 TGAGT-CGATGGAGTTCAATGACATGTTCTGGGCAGTTCATCCAGGAGGACCTGCGATTC 1033
|| || || ||||||| |||||| | ||||||||||||||||| || ||||| || || |
Sbjct 902 TG-GTGCGTTGGAGTTGAATGACCTTTTCTGGGCAGTTCATCCTGGTGGACCAGCCATCC 960
Query 1034 TGAACCGTCTGGAGACAAAACTAAAGCTGGAGAAAGAGAAGCTGGAGA-GCAGCAGAAGG 1092
||| | | ||||||||||| || |||||| || || |||||||| | |||||||||||
Sbjct 961 TGAGCGGGCTGGAGACAAAGCTGAAGCTGAAGCCGGAAAAGCTGGA-ATGCAGCAGAAGG 1019
Query 1093 GCGTTGGTGGATTACGGGAACGTGAGCAGCAACACGATACTG-TATGTGATGGAGTATA- 1150
|||||| ||||||| |||||||| ||||||||||| || || || | ||||| | |
Sbjct 1020 GCGTTGATGGATTATGGGAACGTAAGCAGCAACACCAT-CTTCTACATAATGGACAA-AG 1077
Query 1151 TGAGAGAGGAGCT-GAAGAAGAAAGGTGAC-GCAGC-ACAAGAGTGGGGACTTGGCTTAG 1207
| ||||| ||||| || ||||||||| || | || | |||||||||| || |||||||
Sbjct 1078 TCAGAGATGAGCTTGA-GAAGAAAGGC-ACAG-AGGGAGAAGAGTGGGGTCTGGGCTTAG 1134
Query 1208 CTTTCGGACCTGGAATCACCTTCGAAGGCCTTCTCAT 1244
|||||||||| |||||||| ||||||||| |||||||
Sbjct 1135 CTTTCGGACCGGGAATCACTTTCGAAGGCTTTCTCAT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63503689425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5