BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470075
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01990.1 | Symbols: | unknown protein; Has 32 Blast hits to... 922 0.0
> AT1G01990.1 | Symbols: | unknown protein; Has 32 Blast hits
to 32 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:343166-344341 REVERSE LENGTH=1176
Length=1176
Score = 922 bits (499), Expect = 0.0
Identities = 647/715 (90%), Gaps = 24/715 (3%)
Strand=Plus/Plus
Query 49 AGAAATGGGGAGTCTAGTGAAGGC---GTA-T-T-ACCAGATGAACCACAACAGCATCCC 102
||||||||||||| ||||||| || || | | |||||||| | |||||||||||
Sbjct 139 AGAAATGGGGAGTTTAGTGAAAGCATATTACTGTAACCAGATGCATCACAACAGCAT--- 195
Query 103 CTTTCACCA-TTACAACAGTTACAGGCCTTCCAA-CCTTCAAAACCCTatctccctcttc 160
| | | ||| || || || |||||| |||| ||| |||||||||||||||||||||||||
Sbjct 196 CATCCCCCACTTTCACCA-TTACAGACCTT-CAAGCCTTCAAAACCCTATCTCCCTCTTC 253
Query 161 gccatcacttctccctcctctgacccatcatcttctctccctcctcctcacaaacatccc 220
|||||||||||||||||||| | | | | | || || |||||||| |||||||||
Sbjct 254 GCCATCACTTCTCCCTCCTC---CTC-TGAACCTC-CT-TCTCCTCCTGTTAAACATCCC 307
Query 221 cctcctctATTCGTCGGCGGCGGCGGCCACTTCATCATCCCCACCATCGCCGTCGCTGCT 280
| ||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CTTCCTC-AAT--TCGGCGGCGGCGGCCACTTCATCATCCCCACCATCGCCGTCGCTGCT 364
Query 281 TCCGCCTGGTTCTTCTTCCGTCTCCACCAATACCCTCCTATCATCACCGCCCCTC-TTGA 339
||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct 365 TCCGCCTGGTTCTTCTTCCGTCTACACCAATACCCTCCTATCATCACCTCCCC-CGTTGA 423
Query 340 TCTCCACCTCGATTTGCTGGAAGATGGTGCTATCAAAGAGCTTCCTTTGGAGAGCAAGCC 399
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 424 TCTCCACCTCGATTTGGAAGAAGAAGGCGCTATCAAAGAGCTTCCTTTGGAGAGCAAGCC 483
Query 400 TCGTTATGTTCAAGCTCTTCACTTTTACAAAATCCAGCCAGGTACGGTCTTGAAACTCTT 459
| |||| ||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 484 TGGTTACGTTAAAGCTCTTCACTTCTACAAAATCAAGCCAGGTACCGTCTTGAAACTCTT 543
Query 460 AGACGTTTTCGACTCCGATAGCTACGACTCCTTGAAAGCCCGGATTCGTTTATCCGCCGA 519
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GGACGTTTTCGACTCCGACAGCTACGACTCCTTGAAAGCCCGGATTCGTTTATCCGCCGA 603
Query 520 GTGGTTAGAAACTGCCAGGAGGGAATTGGAGGAGGTGGTGGAGAGGGATCCGGGTCGGGT 579
||||||||||||||||||||| ||||||||||||||||| ||||| || || ||||||||
Sbjct 604 GTGGTTAGAAACTGCCAGGAGAGAATTGGAGGAGGTGGTTGAGAGAGACCCTGGTCGGGT 663
Query 580 CATGGAGTATTCTCAGGTGGTTGATGAGCTCATGGAGATTCTCAGGGATATGGAAGTTTA 639
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 664 CATGGAGTATTCTCAGGTGGTTGATGAGCTCATGGAGATTCTCAGGGACATGGAGGTTTA 723
Query 640 CATTGATAAATGCCAAAAGGACAACGTCAAGGGTTACCTCAGATCCTGCAACCGATTGCT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 CATTGATAAATGCCAAAAGGACAACGTCAAGGGTTACCTCAGATCCTGCAACCGATTGCT 783
Query 700 TGCTCGTGTCAGGAGAATGGAAGCTCAGATTCTCAATGTCCTCAAAGAGTTCCAC 754
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 784 TGCTCGTGTCAGGAGAATGGAAGCTCAGATTCTCAATGTCCTCAAAGAGTTTCAC 838
Score = 89.8 bits (48), Expect = 5e-17
Identities = 55/58 (95%), Gaps = 2/58 (3%)
Strand=Plus/Plus
Query 782 CAAAGTTCATTATGTTTTGGTTCTATCTCTATCTCTAGGATGGTAAATAGATGGTAAT 839
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 930 CAAAGTTCATTATGTTTTGGTTCTA--TCTATCTCTAGGATGGTAAATAGGTGGTAAT 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5