BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470076
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01980.1 | Symbols: | FAD-binding Berberine family protein ... 2617 0.0
AT4G20830.1 | Symbols: | FAD-binding Berberine family protein ... 185 1e-45
> AT1G01980.1 | Symbols: | FAD-binding Berberine family protein
| chr1:340172-341999 REVERSE LENGTH=1828
Length=1828
Score = 2617 bits (1417), Expect = 0.0
Identities = 1561/1632 (96%), Gaps = 4/1632 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTCTCTTGTTTTGTTTTTCTCATATTATTGTCTCTTGTTTCGAGTTCTCTTGCC 60
||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 ATGAAGCTCTCTTGTTTGGTTTTTCTCATAGTATCGTCTCTTGTTTCGAGTTCTCTTGCC 60
Query 61 ACGGCTCCGCCCAACGCATCTATTTACGAAAGCTTTCTCCAATGTTTCAGCAACCACACA 120
|| |||||||||||| ||||||| || |||||||||||||||||||||||||| || |||
Sbjct 61 ACCGCTCCGCCCAACACATCTATATATGAAAGCTTTCTCCAATGTTTCAGCAATCAAACA 120
Query 121 GGCGCTCCTCCTGAGAAGTTATGCGACGTCGTTCTGCCTCAAAGCAGTGCCAGCTTCACC 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTGCTCCTCCTGAGAAGTTATGCGACGTCGTTCTGCCTCAAAGCAGTGCCAGCTTCACT 180
Query 181 CCAACCCTACGCGCCTACATCCGCAACGCTCGTTTCAACACTTCCACGTCTCCCAAACCT 240
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 181 CCAACCCTACGTGCCTACATCCGTAACGCTCGTTTCAACACTTCCACGTCCCCCAAACCT 240
Query 241 CTGCTCGTTATCGCGGCGCGTTCTGAGTGCCACGTCCAGGCCACCGTCCTCTGCACCAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGCTCGTTATCGCGGCGCGTTCTGAGTGCCACGTCCAGGCCACCGTCCTCTGCACCAAA 300
Query 301 TCTCTCAACTTCCAGCTCAAGACTCGCAGCGGCGGCCATGACTACGACGGCGTTTCCTAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCTCAACTTCCAGCTCAAGACTCGCAGCGGCGGCCATGACTACGACGGCGTTTCCTAC 360
Query 361 ATCTCTAACTGCCCTTTCTTCGTCCTCGACATGTCCTGTCTCCGTAACATCACCGTCGAT 420
||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 361 ATCTCTAACCGCCCTTTCTTCGTCCTCGACATGTCCTATCTCCGTAACATTACCGTCGAT 420
Query 421 ATGTCCGACAACGGAGGCTCTGCCTGGGTTGGAGCCGGCGCTACTCTCGGCGAGGTTTAT 480
||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 421 ATGTCCGACGACGGCGGCTCTGCTTGGGTTGGAGCCGGCGCTACTCTCGGCGAAGTTTAT 480
Query 481 TACAACATTTGGCAGAGCAGCAAAACTCACGGCACTCACGGGTTTCCCGCCGGAGTTTGT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 481 TACAACATTTGGCAGAGCAGCAAAACTCACGGCACTCACGGATTTCCCGCCGGTGTTTGT 540
Query 541 CCCACCGTCGGAGCCGGGGGTCACATTAGCGGCGGAGGCTACGGCAACATGATCAGAAAG 600
||||| || || || || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 CCCACAGTAGGCGCTGGAGGTCACATTAGCGGCGGGGGCTACGGCAACATGATCAGAAAA 600
Query 601 TACGGGCTTTCCGTTGATTACGTCACGGACGCCAAGATCGTAGACGTGAACGGACGGATT 660
||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 TACGGACTTTCCGTGGACTACGTCACGGACGCCAAAATCGTAGACGTGAACGGACGGATT 660
Query 661 CTCGATCGTAAATCGATGGGAGAGGATTTCTTTTGGGCAATTGGAGGCGGTGGTGGTGCG 720
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 661 CTCGATCGTAAATCGATGGGAGAGGATTTGTTTTGGGCGATTGGAGGCGGTGGTGGTGCG 720
Query 721 AGCTTCGGCGTGATCTTATCTTTCAAAATCAAACTCGTGCCTGTTCCTCCGAGGGTGACT 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 AGCTTCGGCGTGATCTTATCTTTCAAGATCAAACTCGTGCCTGTTCCTCCGAGGGTGACT 780
Query 781 GTTTTCAGAGTGGAGAAAACCCTCG-AGGAAAACGCACTTGACATGGTCCATAAATGGCA 839
||||||||||||||||| ||||| | || |||||||||||||||||||||||||||||||
Sbjct 781 GTTTTCAGAGTGGAGAAGACCCTAGTAG-AAAACGCACTTGACATGGTCCATAAATGGCA 839
Query 840 GTTTGTTGCTCCCAAGACCAGCCCGGATCTCTTCATGAGGCTAATGTTGCAGCCGGTGAC 899
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 GTTTGTTGCTCCCAAGACCAGCCCGGATCTCTTCATGAGGCTAATGTTGCAGCCAGTGAC 899
Query 900 CCGGAACACGACTCAGACTGTTCGAGCGTCGGTGGTTGCTCTGTTCTTGGGAAAACAGAG 959
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 900 CCGGAACACGACTCAGACGGTTCGCGCGTCGGTAGTTGCTCTGTTCTTGGGAAAACAGAG 959
Query 960 CGATCTCATGTCTCTGCTGACCAAAGAGTTCCCGGAGCTTGGTCTGAAGCCGGAGAATTG 1019
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 960 CGATCTCATGTCTCTGCTGACCAAGGAGTTCCCCGAGCTTGGTCTGAAGCCGGAGAATTG 1019
Query 1020 CACGGAGATGACGTGGATACAGTCGGTGATGTGGTGGGCCAACAACGACAACGCCACGGA 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CACGGAGATGACGTGGATACAGTCGGTGATGTGGTGGGCCAACAACGACAACGCCACGGT 1079
Query 1080 GATTAAACCGGAGATCCTGCTGGACCGAAACCCGGATTCGGCGTCTTTCTTGAAAAGAAA 1139
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1080 GATTAAACCGGAGATCCTGCTGGATCGAAATCCGGATTCGGCGTCTTTCTTGAAAAGAAA 1139
Query 1140 ATCGGATTACGTGGAGACAGAGATTAGCAAAGACGGTTTAGATTTCCTGTTTAAGAAGTT 1199
||||||||||||||||| |||||| ||||||||||||||||||||| ||| |||||||||
Sbjct 1140 ATCGGATTACGTGGAGAAAGAGATCAGCAAAGACGGTTTAGATTTCTTGTGTAAGAAGTT 1199
Query 1200 GATGGAGGCTGGGAAGCTAGGGCTTGTTTTCAATCCGTATGGAGGGAAAATGAGCGAAGT 1259
|||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||
Sbjct 1200 GATGGAGGCTGGGAAGCTAGGGCTAGTGTTCAATCCATACGGAGGGAAAATGAGCGAAGT 1259
Query 1260 TGCTACTACGGCGACTCCATTCCCACACAGGAAGAGGCTTTTCAAGGTCCAGCATTCGAT 1319
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGCTACGACGGCGACTCCGTTCCCACACAGGAAGAGGCTTTTCAAGGTCCAGCATTCGAT 1319
Query 1320 GAACTGGAAAGACCCGGGCACTGAAGCGGAGAGCAGTTTCATGGAAAGGACGAGAAGCTT 1379
|||||||||||||||||||||||| | || |||||||||||||||| ||||||||||||
Sbjct 1320 GAACTGGAAAGACCCGGGCACTGATGTTGAAAGCAGTTTCATGGAAAAGACGAGAAGCTT 1379
Query 1380 CTACAGCTACATGGCTCCTTTCGTGACCAAGAATCCAAGACACACGTATCTCAATTACAG 1439
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1380 CTACAGCTACATGGCTCCTTTCGTGACCAAGAATCCAAGACACACGTATCTCAACTACAG 1439
Query 1440 GGATCTTGATATCGGGATCAACAGCCATGGCCCGAAA-AGTTACAGAGAAGCTGAGGTTT 1498
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1440 GGATCTTGATATCGGGATCAACAGCCATGGCCC-AAACAGTTACAGAGAAGCTGAGGTTT 1498
Query 1499 ACGGGAGAAAGTATTTCGGAGAGAATTTTGATCGGTTGGTCAAAGTCAAAACAGCCGTGG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACGGGAGAAAGTATTTCGGAGAGAATTTTGATCGGTTGGTCAAAGTCAAAACAGCCGTGG 1558
Query 1559 ATCCAGAAAACTTTTTCAGAGATGAACAGAGTATACCTACCTTGCCTACCAAGCCAGCCT 1618
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1559 ATCCAGAAAACTTTTTCAGAGATGAACAAAGTATACCTACCTTGCCTACCAAGCCATCCT 1618
Query 1619 CGAGTTAGTTTT 1630
|||||||| |||
Sbjct 1619 CGAGTTAGGTTT 1630
> AT4G20830.1 | Symbols: | FAD-binding Berberine family protein
| chr4:11155453-11157806 FORWARD LENGTH=1975
Length=1975
Score = 185 bits (100), Expect = 1e-45
Identities = 1038/1471 (71%), Gaps = 143/1471 (10%)
Strand=Plus/Plus
Query 196 TACATCCGCAACGCTCGTTTCAACACTTCCACGT-CTCCCAAACCTCTGC-TCGTTATCG 253
||||||||||| || | |||||||||||| | | ||| ||||| | | || | |||
Sbjct 250 TACATCCGCAATGCGAGGTTCAACACTTCCTC-TACTCTTAAACC-CACCATCATAATCA 307
Query 254 CGGCGCGTTCTGAGTGCCACGTCCAG-GCCACCGTC-CTCTGCACCAAATCTCTCAACTT 311
| | || || ||| ||||||| ||| ||| ||||| || ||| | ||| | || || ||
Sbjct 308 CTCCTCGCTCCGAGAGCCACGT-CAGCGCCGCCGTCACT-TGCTCAAAAACCCTAAATTT 365
Query 312 CCAGCTCAAGACT-CGCAGCGGCGGCCATGACTACGACGG-CGTTTCCTACATCTCTAAC 369
|| ||||| | | || |||||||||||||||||||| || | | || ||||| || ||
Sbjct 366 CCTCCTCAA-AATCCGAAGCGGCGGCCATGACTACGATGGTC-TCTCTTACATTTCCGAC 423
Query 370 -TGCCCTTTCTTCGTCCTCGACATGTCCTGTCTCCGTAACATCACCGTCGATATGTCCGA 428
|| ||| ||| ||||||||||||| | ||||| || || | || |||| | ||
Sbjct 424 AAACCATTT-TTCATCCTCGACATGTCGAATATCCGTGACGTCTCTGTAGATA--T-CG- 478
Query 429 CAACGGAGGCTCTGCCTGGGT-TGGAGCCGGCGCTACTCTCGGCGAGGTTTATTA-CAAC 486
| | || || || ||| | | ||||| || |||||||| ||||||||||| |
Sbjct 479 CCTC-GA-ATTCGGCATGGATCT-CCGCCGGAGCGACTCTCGGAGAGGTTTATTATC-GG 534
Query 487 ATTTGGCAGAGCAGCAAAACTCACGGCACT-CACGGGTTTCCCGCCGGAGTTTGTCCCAC 545
|||| | | | || |||| || | | | || || || ||||||||||||||||| ||
Sbjct 535 ATTT-G--G-G-AG-AAAA-GCA--G-AGTCCATGGATTCCCCGCCGGAGTTTGTCCGAC 584
Query 546 CGTCGGAGCCGG-GGGTCACATT-AGCGGCGGAGGCTACGGCAACATGATCAGAAAGTAC 603
|| || | || ||| || || |||||||| || ||||| |||||| | || ||||
Sbjct 585 GGTTGGTGTTGGTGGG-CA-TTTAAGCGGCGGTGGTTACGGTAACATGGTGAGGAAGT-T 641
Query 604 GGGCTT-TCCGTTGATTACG-TCACGGACGCCAAGATCGTAGACGTGAACGGACGGATTC 661
|| || || || ||||||| | | ||| ||||||||||| || || ||||| ||| ||
Sbjct 642 TGGATTATCTGTGGATTACGTTGA-GGATGCCAAGATCGTCGATGTAAACGGTCGGGTTT 700
Query 662 TCGATCGTAAATCGATGGGAGAGGAT-TTCTTTTGGGCAATTGGAGGCGGTGGTGGTGCG 720
| ||||| ||| | ||||| |||||| || || ||||| ||| || || || || | |
Sbjct 701 TAGATCGGAAAGCAATGGGTGAGGATCTT-TTCTGGGCGATTACCGGTGGAGGAGGAG-G 758
Query 721 -AGCTTCGGCGT-GATCTTATCTTTCAAAATCAAACTCGTGCCTGTTCC-TCCGAG-GGT 776
|||| |||||| | | || | |||| |||| || || ||||| || | || | ||
Sbjct 759 TAGCTACGGCGTCG-TTTTGGGATACAAAGTCAAGCTTGTTCCTGTGCCAT-CG-GTCGT 815
Query 777 GACTGT-TTTCAGAGTGGAG-AAAACCCTCGA-GGAAAACGCACTTGACATGGTCCATAA 833
|| || ||| ||||||||| | | | || | | || | || ||||| || ||
Sbjct 816 TACGGTGTTT-AGAGTGGAGCAGTA-TATGGATTCAGGA-GCTGTGGATATGGTTCACAA 872
Query 834 ATGGCAGTTTGTTGCTCCCAAGACCAG-CCCGGATCTCTTCATGAGGCTAATGTTG---C 889
|||||| | |||| ||| || | | | ||| |||| || |||| | ||||||| |
Sbjct 873 ATGGCAATCGGTTGGTCCGAA-AACTGATCCGAATCTGTTTATGA-G--AATGTTGATTC 928
Query 890 AGCCGGTGACCCGGAACACGACT-CAGACTGTTCGAGCGTCGGTGGTTGCTCTGTTCTT- 947
| || ||||| |||| | | | ||||||| |||| || |||||||||||||| ||
Sbjct 929 AACCAGTGACGAGGAAGAAG-GTAAAGACTGTGAGAGCTTCTGTGGTTGCTCTGTTTTTA 987
Query 948 GGGAAAACAGAGCG-A-TCTCATGTCTCTGCTGACCAAAGAGTTCCCGGAGCTT-GGTCT 1004
|| | | |||| | | | | || || |||| | || ||||| || || || ||| |
Sbjct 988 GGCAGAGCAGA-TGAAGT-TGTTG-CTTTGCTTAGTAAGGAGTTTCCTGA-ATTGGGTTT 1043
Query 1005 GAAGCCGGAGAATTGCACGGAGATGACGTGGATACAGTC-GGTGATGTGGTGGGCCAACA 1063
||| ||||||||| |||||||||| ||| | ||||| | | | ||||||| |||
Sbjct 1044 AAAGAAGGAGAATTGTTCGGAGATGACTTGGTTTCAGTCTGCT-TTATGGTGGG---ACA 1099
Query 1064 A-CGAC--AACGCCACGGAGATTAAACCGGAGA-TCCTGCTGGA-CCGAAACCCGGATTC 1118
| || | || || || || || | || | | | | || || | ||| | | ||| |
Sbjct 1100 ATCGTCTTAATGCTACTCAGGTTGATCC-TAAAGTGTTTCTTGATCGGAATCTC-GATAC 1157
Query 1119 GGCGTCTTTCTTG-AAAAGAAAATCGGATTACGTGGAGACAGAGATTAGC-AA-AGACGG 1175
|| |||| | || || |||||||||||||| | ||| | |||| | || | | ||
Sbjct 1158 CTCGAGTTTC-GGTAAGAGGAAATCGGATTACGTCGCGACTGCGATT-CCGAAGAAAGGG 1215
Query 1176 -TTTAGAT-TTCCTGTTTAAGAAGTTGATGGAGGCT-GGGAAGCTAGGGCTTGTTTTCAA 1232
|| || | || |||| |||||| |||| || | | ||||| | ||||||||||||||
Sbjct 1216 ATTGAG-TCTT--TGTTCAAGAAGATGATTGA-GTTAGGGAAAATCGGGCTTGTTTTCAA 1271
Query 1233 TCCGTATGGAGGGAAAATGAGCGAAG-TTGCTACTA-CGGCGACTCCATTCCCACA-CAG 1289
||||||||||||||||||| ||| || |||| || || ||| || || ||||| | |
Sbjct 1272 TCCGTATGGAGGGAAAATG-GCGGAGGTTGCGGTTAACG-CGAAGCCGTTTCCACATC-G 1328
Query 1290 GAAGAGGCTTTTCAAGGTCCAGCATTC-GATGAACTGGAAAGAC--C-CGGGCACTGA-A 1344
|| | |||||||||| | ||| | || | ||||||||||||| | | | || || |
Sbjct 1329 AAACAAGCTTTTCAAGATTCAGTACTCTG-TGAACTGGAAAGAAAACTCTG-CAGAGATA 1386
Query 1345 GCGGAGAGCAGTTTCATGGAA--AGGACGA-GAAGCTTCTACAGCTACATGGCTCC--TT 1399
| | || | || | || || ||| | | | |||| ||||| | |||| | | ||
Sbjct 1387 GAGAAGGG--GTA-CTTG-AATCAGG-CTAAGGTGCTT-TACAGTTTCATGAC-CGGGTT 1439
Query 1400 TCGTGACCAAGAATCCAAG-ACACACGTATCT-CAATTACAGGGATCTTGATATCGG-GA 1456
| |||| ||||||||| || | | || || ||||||| ||||| | |||||||| |
Sbjct 1440 T-GTGAGCAAGAATCCTAGGAGTT-CTTA-CTTCAATTACCGGGATGTCGATATCGGTG- 1495
Query 1457 TCAAC-AGCCATGGCCCGAAAAGTTACAGAG-AAGCTGAGGTTTACGGGAGAAAGTATTT 1514
| || | | |||| |||| ||||||| || ||| ||||| || || || ||||||||
Sbjct 1496 TGAATGATC-ATGGGGCGAATAGTTACA-AGGAAGGAGAGGTGTATGGAAGGAAGTATTT 1553
Query 1515 CGGAGAGAATTTTGATCGGTTGGTCAA-AGTCAAAACAGCCGTGGATCCAGAAAACTTT- 1572
|||||||||||| ||||| || || || | | ||||| || || ||||| | || |||
Sbjct 1554 CGGAGAGAATTTCGATCGATTAGTGAAGATT-AAAACCGCGGTTGATCCCGGGAA-TTTC 1611
Query 1573 TTCAGAGA-TGAACAGAGTATACCTACCTTG 1602
||||| || ||||||||||||||||||||||
Sbjct 1612 TTCAG-GAATGAACAGAGTATACCTACCTTG 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88704363015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5