BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470077
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01970.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2331 0.0
> AT1G01970.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:338291-340077 FORWARD LENGTH=1649
Length=1649
Score = 2331 bits (1262), Expect = 0.0
Identities = 1421/1497 (95%), Gaps = 13/1497 (1%)
Strand=Plus/Plus
Query 1 CACCGCTCTAAATTCTAATCTAT-C-CACCAGCTCTGTATATGAACTTTGCTTTGCTCAT 58
||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||||||
Sbjct 1 CACCGCTCTAAATTCTAATCTATCCACACCAGCTCTGTCTATGAACTTTGCTTGGCTCAT 60
Query 59 CTCTTTTATCTCCAGTTTCT-CTGAGCTCTGCTTTTTGTAAGTAATCATCAGAGAAGCTC 117
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCTTTATCTCCAGTTTCTCCTGAGCTCTGCTTTTTGTAAGTAATCATCAGAGAAGCTC 120
Query 118 AATTCTGTACTTGTATGATCCTTAATTAGGCCTTTGAATATTCCTGACTTGTTTTCTAGA 177
|||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||||||
Sbjct 121 AATTCTGTACTTGTATGATCCTCAATTAGGCCTTTG-A-ATTCATGACTTGTTTTCTAGA 178
Query 178 GATTCCGTTCATGTGAAATCATACGGCCGCCAAATTTAGGTTTTT-TCTTTTAGTTCTGG 236
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 179 GATTAGGTTCATGTGAAATCATACGGCCGCCAAATTTAGGTTTTTCTCTTTTAGTTC--- 235
Query 237 TCTGGAGGTCTACAATGGGAATTTATAGCTGCAGCGCAGTGTTGAGCTTCGGCTTGAAAT 296
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 T-T-GAGGTATACAATGGGAATTTATAGCTGCAGCGCAGTGTTGAGCTTCGGCTTGAAAT 293
Query 297 GTCCATTAGTTATTGCAAGGCATAGGCTTTACCATCGCATGTTTAGACGAATCCCATTAC 356
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 294 GTCCATTAGTTATTGCAAGGCATAGGCTTTACCATCGCATGTTTAGACGAAACCCATTAC 353
Query 357 TTGTAGAATCCCGTCTAAATAGGCTCTGTAGTTGCAAATGTAGTGCGAGTTTGGCCATTG 416
|||||||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 354 TTGTAGAATCCCATCTTAATAGGCTCTGTAGTTGCAAATGTAATGCGAGTCTGGCCATTG 413
Query 417 GCGAGGTTGTAGAGAAGGAAGATACAGAACAAATCCCTAGGTCTAATTGGGTTGATGTTG 476
|||| ||||| |||||||||||| |||| |||| || ||| | |||||||| ||||||||
Sbjct 414 GCGAAGTTGTGGAGAAGGAAGATGCAGAGCAAAGCCGTAGTTTTAATTGGGCTGATGTTG 473
Query 477 GTCTGGATCTGACAGAAGAACAGGATGAGGCAATCACTCGGATTCCTATTAAGATGTCAA 536
||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 474 GTCTGAATCTGACAGAAGAACAAGACGAGGCAATCACTCGGATTCCTATTAAGATGTCAA 533
Query 537 AACGTTGTCAAGCGCTTATGCGGCAGATTATTTGCTTCTCCAGCGAAAAGGGAAGCTTTT 596
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 534 AACGTTGTCAAGCGCTTATGCGGCAAATTATTTGCTTCTCCCCCGAAAAGGGAAGCTTTT 593
Query 597 GTGATTTGTTGGGTGCTTGGGTTAGGAGGATGAACCCCATTAGAGCTGACTGGCTTTCTA 656
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 594 GCGATTTGTTGGGTGCTTGGCTTAGGAGGATGAACCCCATTAGAGCTGACTGGCTTTCTA 653
Query 657 TTCTTAAAGAGTTGAAGAATCTTGACTCTCCCTTTTATATCAAGGTGGCTGAATTTTCGC 716
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 654 TTCTTAAAGAGTTGAAGAATCTTGACTCTCCGTTTTATATCAAGGTGGCTGAATTTTCGC 713
Query 717 TGCTCGAAGATTCCTTTGAAGCGAATGCCCGTGATTATACCAAGATCATCCATTACTATG 776
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 TGCTCCAAGATTCCTTTGAAGCGAATGCCCGTGATTATACCAAGATCATCCATTATTATG 773
Query 777 GGAAGCTAAACCAAGTGGAAGACGCTGAAAGAACTCTTCTTTCCATGAAAAATCGAGGCT 836
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGAAGCTAAACCAAGTAGAAGACGCTGAAAGAACTCTTCTTTCCATGAAAAATCGAGGCT 833
Query 837 TTCTCATTGATCAGGTGACCCTTACTGCAATAGTTCAGTTGTATAGCAAGGCAGGCTATC 896
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 834 TTCTTATTGATCAGGTGACCCTTACTGCAATGGTTCAGTTGTACAGCAAGGCAGGCTGTC 893
Query 897 ATAAATTGGCTGAAGAAACTTTCAACGAGATCAAATTGCTTGGGGAGCCACTAGA-TAAT 955
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 894 ATAAATTGGCTGAAGAAACTTTCAACGAGATCAAATTGCTTGGGGAACCACTAGACT-AC 952
Query 956 CGATCATATGGTTCAATGATTATGGCCTACATTAGAGCTGGTGCCCCCGAGAAAGGAGAG 1015
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 953 CGATCCTATGGTTCAATGATTATGGCCTACATCAGAGCTGGTGTCCCCGAGAAAGGAGAG 1012
Query 1016 GCTTTACTCCGAGAAATGGACTCCCAAGAGATATGTGCGGGAAGAGAGGTTTACAAGGCA 1075
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TCTCTACTTAGAGAAATGGACTCCCAAGAGATATGTGCGGGAAGAGAGGTTTACAAGGCA 1072
Query 1076 TTGTTGAGAGCTTACTCTATGGGTGGAGACGCGGAAGGAGCTAAGCGGGTCTTTGATGCC 1135
|||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1073 TTGTTGAGAGATTACTCTATGGGCGGAGACGCGGAAGGAGCTAAGCGGGTTTTTGATGCA 1132
Query 1136 GTTCAAATTGCGGGGATTACTCCTGATGTAAAGCTATGTGGACTGCTCATAAACGCATAC 1195
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 GTTCAAATTGCAGGTATTACTCCTGATGTAAAGCTATGTGGACTGCTCATAAACGCATAC 1192
Query 1196 AGTGTCTCAGGTCAGAGTCAGAATGCGCGTTTGGCGTTTGAGAATATGAGAAAAGCGGGA 1255
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1193 AGTGTCTCGGGTCAGAGCCAGAATGCTCGTTTGGCGTTTGAGAATATGAGAAAAGCGGGA 1252
Query 1256 ATCAAAGCTACTGATAAGTGTGTGGCTCTTGTATTGGCTGCATATGAGAAGGAAGAAAAG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ATCAAAGCTACTGATAAGTGTGTGGCTCTTGTATTGGCTGCATATGAGAAGGAAGAAAAG 1312
Query 1316 CTAAACGAAGCATTAGGGTTCTTGGTTGAGCTTGAGAAAGACTCTATAATGGTAGGGAAA 1375
||||| ||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1313 CTAAATGAAGCGTTAGGATTCTTGGTAGAGCTTGAGAAAGACTCTATAATGTTAGGGAAA 1372
Query 1376 GAAGCTTCTGCTGTGTTGGCTCAGTGGTTTAAGAAGCTTGGTGTTGTTGAAGAAGTTGAA 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GAAGCTTCTGCTGTGTTGGCTCAGTGGTTTAAGAAGCTTGGTGTTGTTGAAGAAGTTGAA 1432
Query 1436 TTACTTCTTAGGGAGTTTTCATCTAGCCAGTCTCAGCCCCTCTAAGATTGTGGGCTT 1492
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1433 TTACTTCTTAGGGAGTTTTCATCTAGCCAGTCTCAACCCCTCTAACATTGTGGGCTT 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5