BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470081
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01930.1 | Symbols: | zinc finger protein-related | chr1:31... 2828 0.0
> AT1G01930.1 | Symbols: | zinc finger protein-related | chr1:319836-322860
REVERSE LENGTH=1999
Length=1999
Score = 2828 bits (1531), Expect = 0.0
Identities = 1816/1946 (93%), Gaps = 49/1946 (3%)
Strand=Plus/Plus
Query 1 TCCATCCAATTCATGATTCATGGCGACCACCGGCGC--C-G------CCGAGACTGGTAA 51
||| |||||||||| ||| ||||||||||||||||| | | |||||| ||||||
Sbjct 33 TCCGTCCAATTCATAATTAATGGCGACCACCGGCGCGGCGGCCACCACCGAGATTGGTAA 92
Query 52 -CGCAGAATATAAACAGCCTCGATCGATATTTGACTTGACGGCAGATTTCTTTGACTCGT 110
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 93 TC-CAGAATATAAACAGCCTCGATCGATATTTGACTTGACGGCGGATTTCTTTGACTCGT 151
Query 111 GTCGGCTGTCGTATCCTT-GTGAGACTCAATCCGCATATTTCCGGTTAGGACCACCCAAA 169
||||| ||||| |||||| | ||||||||||| || | || | ||||||||||||
Sbjct 152 GTCGGTTGTCGAATCCTTCG-GAGACTCAATCGGC--A-TT-C-----GGACCACCCAAA 201
Query 170 ACTTTCGATCCAGAGGAGGC---GGAGGATAAGAGTTCCAAAGACGGCGTGATTTTGGAC 226
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 202 ACTTTCGATCCAGAGGAGGCGGAGGAGGATAAGAGTTCCAAGGACGGCGTGATTTTGGAC 261
Query 227 AGATGGACCTGTAATACTTGTAAAATTGAGTTCCTGTCTCTTCAAGATCAACGCTACCAC 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 AGATGGACCTGTAATACTTGTAAAATTGAGTTCCTGTCTCTTCAAGATCAACGCTACCAC 321
Query 287 TTCAAGTCCGATATTCATCGCCTTAACATCAAGCTGAGTGTTGCTGGCAAGGCTATTTTG 346
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 322 TTCAAGTCCGATATTCATCGCCTTAACATCAAGCTGAGTGTTGCTGGCAAGGCTATATTA 381
Query 347 AAAGAGGAAGACGTTGATGAGTTGACATCTGAGTCGGTCCAAGACTATGACGTGTCTAGT 406
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 AAAGAGGAAGATGTTGATGAGTTGACATCTGAGTCGGTCCAAGACTATGACGTGTCTAGC 441
Query 407 ATATCAGGATCAGAGGACGAAGCTGAGACTAGTAGG-CCCTCTTTCCACTTTGATGCTCA 465
|||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 442 ATATCAGGTTCAGAGGACGAAGCTGAGACTAG-ACCACCCTCTTTCCACTTTGATGCTCA 500
Query 466 AAAGGGTATCGATAAAAAGAAACTATTTTTCCGTCTTCAAAGTGGTGACAAAGTTTCTAT 525
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AAAGGGTATTGATAAAAAGAAACTATTTTTCCGTCTTCAAAGTGGTGACAAAGTTTCTAT 560
Query 526 ATGGAAAAGCTTAATCATGGACGACGCCGAAACTGTTTCATTCGACAATGACAGAGGAGT 585
|||||| ||||||||||||||||||| |||| |||||| ||||| ||||||||||||||
Sbjct 561 CTGGAAATGCTTAATCATGGACGACGCTGAAAGTGTTTCGTTCGAGAATGACAGAGGAGT 620
Query 586 TTCTGTCGATTTTTGTGGTAGCTTGGCCGAGAATGAAGTGACTCAGAGGTTGAGAAATTT 645
|||||| || | |||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 621 TTCTGTTGACTGTTGTGGTAGCTTGGTCGAGAATGAAGTTACTGAGAGGTTGAGAAATTT 680
Query 646 GATTCGAGAGAATACAG-ATGATAGGAAAATGTGTGTCGTGTTGCTTGCTAGTGGTGGCC 704
|||||||||||||| || |||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 681 GATTCGAGAGAATA-AGGATGATAGGCAAATGCGTGTCGTGTTGCTTGCAAGTGGTGGCC 739
Query 705 ACTTTGCCGGTACTGTCTTTAATGGAAAGTCGGTTGTGGCTCATAAGACATTCCACAGAT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 ACTTTGCCGGTACTGTCTTTAATGGAAAGTCGGTTGTGGCTCATAAGACATTCCACAGAT 799
Query 765 ATGTTGTAAGAGCCAAGGCTGGTAAAAAGCAGTCCACAAAAGATGGAAGCGGCAGGAGTA 824
||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||
Sbjct 800 ATGTTGTAAGAGCCAAGGCTGGTAAAAAGCAGTCCACAAAAGATGCAAGCGGGAGAAGTA 859
Query 825 TACACTCTGCCGGAGCTTCACTTCGTCGCTACAATGAACTTGCTTTAAAAAAGGATATTC 884
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 860 TACACTCTGCCGGAGCCTCACTTCGTCGTTACAATGAACTTGCTTTAAAAAAGGATATTC 919
Query 885 AAGAGCTACTTGCTAGCTGGAAGCCTTATTTTGATGGTGCTGCTTGTGTTTTTGTCCATG 944
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 920 AAGAGCTACTTGCTAGCTGGAAACCTTATTTTGATGGTGCTGCTTGTGTTTTTGTCCATG 979
Query 945 CTCCCTCAAGCAGTAGGCAATTACTTTTCAATGGAGGCAAACCGTACTTTAGCAGCCAAA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 CTCCCTCAAGCAGTAGGCAATTACTTTTCAATGGAGGCAAACCGTACTTTAGCAGCCAAA 1039
Query 1005 ACTGTGCTGTACGAAACGTTCCATTTACGATCCGGCGGCCAACCTTCAAGGAATCACAGC 1064
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1040 ACTGCGCTGTACGAAACGTTCCATTTACGATCCGTCGGCCAACCTTCAAGGAATCACAGC 1099
Query 1065 GTATATATAATCAGTTGACTCAGATTGCACATGTAACTGAGGAGATTTTTGTTAATTTAC 1124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1100 GTATATATAATCAGTTGACTCAGATTGCACATGTAACTGAGGAGATTTTTGTTAATCGAC 1159
Query 1125 CAGAAGACACCAAAGCTAATAAAGTGGTGCAGACCCATAACGAGGATTCTAGCGAAACCT 1184
|||||| |||||||||||||| ||||||||||||||| || ||||||||| || ||||||
Sbjct 1160 CAGAAGTCACCAAAGCTAATACAGTGGTGCAGACCCACAATGAGGATTCTGGCAAAACCT 1219
Query 1185 CAAGAAAGGAAGAGCCCGATGAAACTTCGTCTCCCAACATAATCTTAGAGGAACCAAATC 1244
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1220 CAAGAAAGGAAGAGCCCGATGAAACTTCTTCTAGCAACATAATCTTAGAGGAACCAAATC 1279
Query 1245 GTATAGAAGAGGATCTCGGGGATGGAGTTACTGGTACGTCAACTCCCTTACATGAAGCTG 1304
|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1280 GTATAGAAGAGGATATCGAGGATGGAGTTACTGGTACGTCAACTGCCTTACATGAAGCTG 1339
Query 1305 CCAAATCTGGTGATTGTGAAAGAGTTCTGGAGTTCTTGGAGGAGGGTATGGACCCTTGTG 1364
||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1340 CCAAATCGGGTGATTGTGAAAGAGTTATGGAGTTCTTGGAGGAGGGTATGGATCCTTGTG 1399
Query 1365 CTAAGGATGAAAGAGGCAGAACCCCATACATGCTAGCAAATGAGAAGGAAGTAAGAAACA 1424
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1400 CTAAGGATGAAAGAGGCAGAACGCCATACATGCTTGCAAATGAGAAGGAAGTGAGAAACA 1459
Query 1425 CTTTCAGACGGTTCATGGCGTCAAACCTTGAAAAATGGAATTGGCATGATGCTAAAGTAC 1484
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1460 CTTTCAGACGGTTTATGGCGTTAAACCTTGAAAAATGGAATTGGCATGATGCTAAAGTAC 1519
Query 1485 CCAGCCCGCTCACAAAAGAGATGGAGGAATCTCAAGCTGCCAAGCAGGCAGAAAAAGACG 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 CCAGCCCGCTCACAAAAGAGATGGAGGAATCTCAAGCTGCCAAGCAGGCAGAAAAAGACG 1579
Query 1545 CCAAGCAGAAAGCAAGAGCAAAAGAGTTGAAGAAACTACGCAAAGCCCGAGAAAAGAAGG 1604
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1580 CCAAGCAGAAAGCAAGAACAAAGGAGTTGAAGAAACTACGCAAAGCCCGAGAAAAGAAGG 1639
Query 1605 CTCAAGCCGAAGCTGCGCAGGCTGAGAAGGAGAAGCCAATCTCTAAAGTGGAGGAAGTGA 1664
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1640 CTCAGGCCGAAGCTGCGCAGGCGGAGAAGGAGAAGCCAATTTCTAAAGTGGAGGAAGTGA 1699
Query 1665 GGAGAGCAATGGCAGCACAGAGGGAAAAGAGAGCAGCCGCTGCAGAAAGACGGATGGCAT 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 GGAGAGCAATGGCAGCACAGAGGGAAAAGAGAGCAGCCGCTGCAGAAAGACGGATGGCAT 1759
Query 1725 CACTTAACATTCAAAGCACTTCAACCACAAATTAATTTCCTACTAAAACTTTTGAGTGAA 1784
|||||||||||||||||| ||||| ||||| ||||||||| ||| |||| |||||
Sbjct 1760 CACTTAACATTCAAAGCAGTTCAAGCACAAGTTAATTTCCAACT-----TTTT-AGTGAG 1813
Query 1785 TTATAGGTAAAAGGGGAAAAAGAGTTTGAAAAACAAGAAGTGAGTATCAAACAAAACAAA 1844
||| |||||||| ||| |||| ||||||||||||||||||||||||| || | ||
Sbjct 1814 TTA--GGTAAAAGAGGAGAAAG--TTTGAAAAACAAGAAGTGAGTATCAT-CATTA-AA- 1866
Query 1845 GTGCACAACATTATTGAGCCCCGACTCAATAATTGGGCCTCACACAAATTTGTTTTTAAA 1904
||||||||||||| || |||||||| ||| |||| |||||||||||||||||| |
Sbjct 1867 GTGCACAACATTA-----CC--GACTCAATTATTAGGCCACACACAAATTTGTTTTTAGA 1919
Query 1905 AGGCCCGTTTAGACCACAAACCGACT 1930
||||||||||||||||||||||||||
Sbjct 1920 AGGCCCGTTTAGACCACAAACCGACT 1945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95581837680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5