BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470083
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01920.1 | Symbols: | SET domain-containing protein | chr1:... 1461 0.0
> AT1G01920.1 | Symbols: | SET domain-containing protein | chr1:316187-319644
FORWARD LENGTH=1873
Length=1873
Score = 1461 bits (791), Expect = 0.0
Identities = 945/1015 (93%), Gaps = 28/1015 (3%)
Strand=Plus/Plus
Query 35 GATCTTCGTCGGAGGATATGGCGGCGATTTCAGAAGAAGAAGAAGCCAAACTCGAAAGGT 94
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1 GATCTTCGCCGGAGGATAT---GGCGATTTC---AGAAGAAGAAGCCAAACTCGAAAGGT 54
Query 95 TCCTAGATTGGCTTCAGGTGAATGGAGCTGAATTAAGAGGCTGCAACATCAAATATTCTG 154
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 55 TCCTAGATTGGCTTCAGGTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTG 114
Query 155 ACTCCCGAAAAGGATTTGGCATATTCGCTTCCA-CT-GA---AA-CTTCCGATGATGTTT 208
|||||| |||||||||||||||||||||||||| || | || |||||||||| ||||
Sbjct 115 ACTCCCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATGAAGTTT 174
Query 209 TGCTTGTTGTTCCACTTGATCTGGCCATTACCCCTATGAGAGTTCTTCAGGACCCTCTCC 268
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGCTTGTTGTTCCGCTTGATCTGGCCATTACCCCTATGAGAGTTCTTCAGGACCCTCTCC 234
Query 269 TGGGCCCTGAGTGCCAGAAAATGTTCCAAGACGGACAAGTTGATGACCGCTTTCTCATCA 328
||||||||||||| |||||||||||| || | |||||||||||||||||||||||||| |
Sbjct 235 TGGGCCCTGAGTGTCAGAAAATGTTCGAACAAGGACAAGTTGATGACCGCTTTCTCATGA 294
Query 329 TTTTATTCCTCACTTTCGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCGTATCTTGATA 388
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTCTGTTCCTCACTTTGGAGCGTCTTCGTATCAATTCTTCTTGGAAGCCGTATCTTGATA 354
Query 389 TGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGATGATGACATCCTTGAGCTCA 448
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 355 TGCTTCCTACTCGATTTGGCAATCCTCTTTGGTTTTCTGATGATGACATCCTTGAGCTAA 414
Query 449 ACGGGACTAACTTGTATCACGCAACCGAGTTACAGAAGAAGAATTTGCTGTCGCTTTACC 508
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 415 AAGGGACTAACTTGTATCACGCAACCGAGTTACAGAAGAAGAAGTTGCTCTCGCTTTACC 474
Query 509 ATGACAAGGTGGAGGTCCTGGTGAAAAACCTTCTTATTTTGGATGGCGATTCCCAAAGCA 568
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 475 ATGACAAGGTGGAGGTCCTGGTGACAAAGCTTCTTATTTTGGATGGCGATTCCGAAAGCA 534
Query 569 AGGTCTCCTTTGAACACTTCCTCTGGGCAAACTCTGTATTCTGGAGTCGCGCCTTGAATA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AGGTCTCCTTTGAACACTTCCTCTGGGCAAACTCTGTATTCTGGAGTCGCGCCTTGAATA 594
Query 629 TTCCTCTTCCACATTCTTTCGTGTTTCCACAAAGCCAGGATGATATCGGGGAATGCCCAT 688
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||
Sbjct 595 TTCCTCTTCCACATTCTTTCGTGTTTCCACAAAGCCAAGATGATACCGGGGAATGCACAT 654
Query 689 CAACAAGTCATTCACCTGAAACGGCTCCAGTTAATTCTAATGAGGAAAAAGGCAA-TC-T 746
|||||||| | || ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 655 CAACAAGTGAGTCCCCTGAAACGGCTCCAGTTAATTCTAATGAGGAAAAAGGCAAGTCAT 714
Query 747 GG-CAT-G--T-AAC-TACAACTTCATG-AG-ATCCGGAGATACAATATGGGTTGAGGGG 798
| | | | ||| | | | || || || ||||||||||||||||||||||||||||
Sbjct 715 TAACGTCGGCTCAACCTGCGCCATC-TGTAGGATCCGGAGATACAATATGGGTTGAGGGG 773
Query 799 CTTGTTCCTGGCATTGACTTTTGCAACCATGATTTGAAACCTATGGCGACTTGGGAAGTT 858
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 774 CTTGTTCCTGGCATTGACTTTTGCAACCATGATTTGAAGCCTGTGGCGACTTGGGAAGTT 833
Query 859 GATGGGACCGGATCAGTGTCTAGGGTTCCTTTCTCCATGTACCTTCTCTCCGCAGTCGCT 918
||||||| ||||||||| |||||||||||||||||||||||||||||||| | | |||
Sbjct 834 GATGGGATCGGATCAGTATCTAGGGTTCCTTTCTCCATGTACCTTCTCTCTGT--T-GCT 890
Query 919 CAACGTC-TGATCCCAAACAAGGAGATCTCGATCAGTTATGGTAACAAAGGAAATGAGGA 977
||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CAACGTCCT-ATCCCAAAGAAGGAGATCTCGATCAGTTATGGTAACAAAGGAAATGAGGA 949
Query 978 GCTTCTTTACCTGTATGGCTTTGTGATAGATAACAATCCAGATGATTATCTCATG 1032
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 950 GCTTCTTTACCTGTATGGCTTTGTGATAGATAACAACCCAGATGATTATCTCATG 1004
Score = 1112 bits (602), Expect = 0.0
Identities = 658/685 (96%), Gaps = 3/685 (0%)
Strand=Plus/Plus
Query 1023 TTATCTCATGGTACATTATCCTGTTGAGGCGATTCCGAGTATCCCATTTTCTGATTCCAA 1082
|||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1063 TTAT-TCA-GGTACATTATCCTGTTGAGGCAATTCCGAGTATCCCTTTTTCTGATTCCAA 1120
Query 1083 GGGGCAGCTGCTTGAAGCTCAGAATGCTCAACTCCGGTGTCTCTTACCAAAATCGGTCCT 1142
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1121 GGGGCAGCTGCTTGAAGCTCAGAATGCACAACTCCGGTGTCTCTTGCCAAAATCGGTCCT 1180
Query 1143 AAATCATGGGTTTTTCCCACAAACCACATCAACAATTAGAGAAAGTGATGAGAAAGAAAC 1202
|||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 1181 AAATCATGGGTTTTTCCCACGAACCACATCAGTAATTAGAGAAAGTGATGAGAAGGAAAC 1240
Query 1203 AGAGAGATCCTGTAATTTCAGTTGGTCTGGGCAGCGTAAGATGCCCTCATATATGAATAA 1262
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 1241 AGTGAGATCCTGTAATTTCAGTTGGTCTGGGAAGCGTAAGATGCCCACATATATGAACAA 1300
Query 1263 ACTAGTTTTCCGAGAAGATTTTATGACTGGCTTAAGGACCATTGCCATGCAAGAAGAAGA 1322
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1301 ACTAGTTTTCCCAGAAGATTTTATGACTGGCTTAAGGACCATTGCAATGCAAGAAGAAGA 1360
Query 1323 GATTAACAAGGTCTCAGCTATGCTTGAAGAGCTTGTAGAGTCAAGACCAGGCGAGCAACC 1382
|||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1361 GATTTACAAGGTCTCAGCTATGCTTGAAGAGCTTGTTGAGTCAAGACAAGGCGAGCAACC 1420
Query 1383 TTCTGAAACTGAGGTCAGGATGGCGGTATGGGAAGCATGCGGGGATTCTGGAGCTTTGCA 1442
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1421 TTCTGAAACTGAGGTCAGGATGGCAGTATGGGAAGCATGTGGGGATTCTGGAGCTTTGCA 1480
Query 1443 GTTACTTGTGGATCTCCTTAATGCAAAGATGATGAAGCTGGAAGAGAATTCTGGCACTGA 1502
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1481 GTTACTTGTGGATCTCCTTAATTCAAAGATGATGAAGCTGGAAGAGAATTCTGGCACTGA 1540
Query 1503 AGAACAAGATGCTAGGCTCCTTGAGGAGGCGTGCGTCTTAGAGAGCCATGAAGAAGCGAG 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1541 AGAACAAGATGCTAGGCTCCTTGAGGAGGCGTGCGTCTTAGAGAGCCATGAAGAATCGAG 1600
Query 1563 GGACTTGGATGGGAGAAGGATGAGCAGAAACAAGTGGTCAAGTGTAGTGTACCGTAGAGG 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 GGACTTGGATGGGAGAAGGATGAGCAGAAACAAGTGGTCAAGTGTAGTGTACCGTAGAGG 1660
Query 1623 ACAGAAGCAGCTCACAAGACTGTTCTTGAAGGAGGCAGAGTATGCCCTTCACTTAGCTCT 1682
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1661 ACAGAAGCAGCTCACAAGACTGTTGTTGAAGGAGGCAGAGCATGCCCTTCACTTAGCTCT 1720
Query 1683 CTCCTCTGACTATTGACT-ATATCT 1706
|||||||||| ||||||| ||||||
Sbjct 1721 CTCCTCTGACCATTGACTGATATCT 1745
Score = 102 bits (55), Expect = 1e-20
Identities = 71/78 (91%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 1701 ATATCTATTTCAAATGCTAAATAAG-TAATTATG-G-TATAACAATTATTAGTGTGTGGC 1757
||||| |||||||| |||||||||| |||| || | |||||||||||||||||||||||
Sbjct 1777 ATATCCATTTCAAAGGCTAAATAAGCAAATTGTGTGATATAACAATTATTAGTGTGTGGC 1836
Query 1758 ACCAAATTAACGGTCTAT 1775
||||||||||||||||||
Sbjct 1837 ACCAAATTAACGGTCTAT 1854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87800753205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5