BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470088
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01910.1 | Symbols: | P-loop containing nucleoside triphosp... 1823 0.0
> AT1G01910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:313215-315902 REVERSE
LENGTH=1365
Length=1365
Score = 1823 bits (987), Expect = 0.0
Identities = 1060/1096 (97%), Gaps = 2/1096 (0%)
Strand=Plus/Plus
Query 1 TAGCAATGGCGGCGGATTTGCCGGAGGCCACGGTGCAGAACATTCTGGACCAAGAGTCTC 60
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 67 TAGCAATGGCGGCGGATTTGCCGGAGGCGACAGTACAGAACATTCTGGACCAAGAGTCTC 126
Query 61 TTAAATGGGTTTTCGTCGGAGGGAAAGGAGGTGTGGGGAAGACGACATGCAGTTCAATTC 120
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 127 TTAAATGGGTTTTCGTCGGAGGTAAAGGAGGTGTTGGGAAGACGACATGCAGTTCAATTC 186
Query 121 TCGCAATTTGTCTCGCCAGTGTTCGATCCTCCGTTCTCATCATCTCCACCGATCCTGCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TCGCAATTTGTCTCGCCAGTGTTCGATCCTCCGTTCTCATCATCTCCACCGATCCTGCTC 246
Query 181 ACAATCTTAGTGATGCCTTTCAGCAACGCTTCACTAAATCCCCCACTTTGGTTCAAGGTT 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 247 ACAATCTTAGTGATGCCTTTCAGCAACGCTTCACTAAATCTCCCACTTTGGTTCAAGGTT 306
Query 241 TCTCTAATCTCTTTGCCATGGAGGTGGATCCTACCGTTGAAACTGATGACCTGGCTGGTG 300
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 307 TCTCTAATCTCTTTGCCATGGAGGTAGATCCTACCGTTGAAACTGATGACATGGCTGGTA 366
Query 301 CAGACGGGATGGATGGTTTATTCTCTGATTTGGCTAATGCGATTCCTGGAATCGATGAGG 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 367 CAGACGGGATGGATGGTTTATTCTCTGATTTGGCAAATGCGATTCCTGGAATCGATGAGG 426
Query 361 CCATGAGTTTTGCTGAGATGTTGAAGTTGGTGCAAACAATGGATTATGCTACTATTGTGT 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CTATGAGTTTTGCTGAGATGTTGAAGTTGGTGCAAACAATGGATTATGCTACTATTGTGT 486
Query 421 TTGACACAGCTCCAACTGGACATACTCTCCGCCTGTTACAGTTTCCAGCCACACTAGAAA 480
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 487 TTGACACTGCTCCTACTGGACATACTCTCCGCCTGTTACAGTTTCCGGCCACACTAGAAA 546
Query 481 AGGGACTTTCCAAGTTGATGTCATTGAAGAGTAGATTTGGTGGCTTGATGACTCAGATGA 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGGGACTTTCGAAGTTGATGTCATTGAAGAGTAGATTTGGTGGCTTGATGACTCAGATGA 606
Query 541 GCCGTATGTTTGGCATAGAGGATGAGTTTGGAGAGGATGCTCTGTTGGGAAGACTTGAGG 600
|||||||||||||||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 607 GCCGTATGTTTGGCATGGAGGATGAGTTCGGAGAGGATGCTTTGCTGGGAAGACTTGAGG 666
Query 601 GATTGAAAGATGTGATTGAGCAAGTAAATCGGCAATTCAAAGACCCGGATATGACTACGT 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCTTGAAAGATGTGATTGAGCAAGTAAATCGGCAATTCAAAGACCCGGATATGACTACGT 726
Query 661 TCGTCTGTGTCTGCATCCCCGAGTTCTTGTCTCTCTATGAAACAGAGAGACTTGTTCAGG 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TCGTTTGTGTCTGCATCCCCGAGTTCTTGTCTCTCTATGAAACAGAGAGACTTGTTCAGG 786
Query 721 AACTTGCCAAGTTTGAGATCGACACGCATAACATTATCATCAACCAAGTACTATACGATG 780
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 787 AACTCGCCAAGTTTGAGATTGACACGCATAACATTATCATCAACCAAGTACTATACGACG 846
Query 781 ACGAAGATGTGGAATCCAAGTTGCTCAGAGCAAGGATGCGGATGCAACAGAAGTATCTTG 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ACGAAGATGTGGAGTCCAAGTTGCTCAGAGCAAGGATGCGGATGCAACAGAAGTATCTTG 906
Query 841 ATCAGTTTTATATGCTATACGATGACTTCAATATCACAAAACTTCCTCTGCTTCCGGAAG 900
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 907 ATCAGTTTTATATGCTATACGATGACTTTAATATCACAAAGCTTCCTCTGCTTCCGGAAG 966
Query 901 AGGTAACAGGGGTTGAAGCCTTAAAGGCGTTTTCACATAAGTTCTTGACACCGTACCATC 960
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 967 AGGTGACAGGGGTTGAAGCCTTAAAGGCGTTTTCACATAAGTTCTTGACGCCGTACCATC 1026
Query 961 CTACCACTAGCAGAAGCAATGTAGAGGAGCTGGAGCGGAAAGTACACACATTGCGTTTGC 1020
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1027 CTACCACTAGCAGGAGCAATGTAGAGGAGCTGGAGAGGAAAGTACACACATTGCGTTTGC 1086
Query 1021 AGTTGAAAACAGCTGAAGAAGAACTCGAACGGGTCAAGAGTGGGTAAAAAGATAAGGCTA 1080
|||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1087 AGTTAAAAACAGCTGAAGAAGAACTCGAACGGGTCAAGAGTGGCTAAA--GATAAGGCTC 1144
Query 1081 TGTTCTTCCCTTTAAT 1096
||||||||||||||||
Sbjct 1145 TGTTCTTCCCTTTAAT 1160
Score = 235 bits (127), Expect = 8e-61
Identities = 180/203 (89%), Gaps = 13/203 (6%)
Strand=Plus/Plus
Query 1132 TTCCTCATCTAGCAACAACTCTTTATAGGACAGGAAACATGATCAAGCAGAATCATCTTT 1191
||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 1162 TTCTTCATCTAGCAACAACTCTTTATAGGACAGGAAAGAAGATCAAGCAGAATCTTCTTT 1221
Query 1192 TGCGTTGTTTTATTGTTATGCATTGGATTTATTTTTC-ATTTGTAATAATCAAGACTACA 1250
|||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 1222 TGCGTTGTTTTATTGTTATGCATTGGATTTGTTTTTATATTTGTAATAATCATGACTACA 1281
Query 1251 TATAGAATC-TATCTACCAAGAAATCGT-------CGACTAAATCAGCTTTT-A-ATATT 1300
|| || || |||||||||||||||||| ||||| ||||||||||| | |||||
Sbjct 1282 TA--GACTCATATCTACCAAGAAATCGTTGTTTTACGACTTAATCAGCTTTTTATATATT 1339
Query 1301 AAGTTGAAGGGTCTCTGTGACAA 1323
|||||||||||| ||||||||||
Sbjct 1340 AAGTTGAAGGGTATCTGTGACAA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5