BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470090
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01860.1 | Symbols: PFC1 | Ribosomal RNA adenine dimethylase... 1796 0.0
> AT1G01860.1 | Symbols: PFC1 | Ribosomal RNA adenine dimethylase
family protein | chr1:304133-306287 REVERSE LENGTH=1350
Length=1350
Score = 1796 bits (972), Expect = 0.0
Identities = 1094/1151 (95%), Gaps = 15/1151 (1%)
Strand=Plus/Plus
Query 1 GTCTTATCGGAAATTATGAATGCGGTAATAACATCAACCATCATCAACTGCAACTCTCTA 60
|||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1 GTCTTATCGGAAATGATGAATGCGGTAATAACATCAGCCACCATCAACTGCAACTCTCTG 60
Query 61 TCGCCGTCGTCATGGATAAGCGGAGAGAATTGGCCGTCAAAGGTTCTGTTGGGGGAAATC 120
||| | ||||||||| | ||||||| |||| |||||||||| ||||||||||||||||
Sbjct 61 TCG-C--CGTCATGGACATGCGGAGACAATTCGCCGTCAAAGCTTCTGTTGGGGGAAATA 117
Query 121 TCTGCCGCGTTCTCACGGCGGAGGA-C--GAAGGTGTCATGCGGCAAGAGCAGCCCAGAT 177
||||||||||| ||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct 118 TCTGCCGCGTTATCACGACGGAGGACCGTGAAGGTGTCATGCGGCAAGAGCAGCCCAGAT 177
Query 178 GATTACCACTCAACTCTCAAATCACTCAATTCTCGTGGTCGCTTTCCCAGAAAATCCCTC 237
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 178 GATTACCACTCAACCCTCAAATCACTCAATTCTCGTGGTCGGTTTCCCAGAAAGTCCCTC 237
Query 238 GGCCAGCATTACATGTTGAATTCGGATATCAACGACCAGCTAGCCTCTGCGGCTGATGTG 297
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 238 GGCCAGCATTACATGTTGAATTCGGACATCAACGACCAGCTAGCCTCTGCGGCTGATGTG 297
Query 298 AAAGAAGGAGATTTTGTATTAGAGATTGGTCCTGGGACTGGTTCTTTAACCAATGTCCTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAAGAAGGAGATTTTGTATTAGAGATTGGTCCTGGGACTGGTTCTTTAACCAATGTCCTT 357
Query 358 ATCAATTTAGGTGCCACAGTTCTTGCCATCGAAAAGGATCCTCATATGGTTGATTTGGTG 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATCAATTTAGGTGCTACAGTTCTTGCCATCGAAAAGGATCCTCATATGGTTGATTTGGTG 417
Query 418 AGTGAACGATTTGCAGGTTCTGACAAGTTCAAGGTTTTGCAAGAGGATTTTGTCAAGTTT 477
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 AGCGAACGATTTGCTGGTTCTGACAAGTTCAAGGTTTTGCAAGAGGATTTTGTCAAGTGT 477
Query 478 CACATCCGTTCTCACATGCTCTCCATTTTAGAGAGC-AGAAGGTTATCACATCCAGATTC 536
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 478 CACATCCGTTCTCACATGCTCTCCATTTTAGAGA-CTAGAAGGTTATCACATCCAGATTC 536
Query 537 TTCTCTTGCAAAGGTTGTTTCTAACTTACCTTTCAATATAAGTACTGATGTTGTGAAGCT 596
| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 537 TGCTCTTGCAAAGGTTGTTTCCAATTTACCTTTCAATATAAGTACTGATGTTGTGAAGCT 596
Query 597 TCTACTTCCTATGGGTGATATCTTCTCAAAAGTTGTTCTCTTACTCCAGGACGAGGCAGC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCTACTTCCTATGGGTGATATCTTCTCAAAAGTTGTTCTCTTACTCCAGGACGAGGCAGC 656
Query 657 ATTGCGATTGGTTGAACCAGCACTGCGAACATCTGAATACCGTCCCATCAATATTTTGAT 716
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 ATTGCGATTGGTTGAACCAGCACTGCGAACATCTGAATACCGTCCCATCAACATTTTGAT 716
Query 717 CAACTTCTATTCAGAACCGGAATACAATTTCAGAGTTCCTAGGGAAAACTTCTTCCCTCA 776
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAACTTCTATTCTGAACCGGAATACAATTTCAGAGTTCCTAGGGAAAACTTCTTCCCTCA 776
Query 777 GCCCAAGGTTGATGCTGCTGTTGTAACATTCAAGCTGAAGCATCCGAGTGACTATCCTGA 836
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 777 GCCCAAGGTTGATGCTGCTGTCGTAACATTCAAGCTGAAGCATCCGAGGGACTATCCTGA 836
Query 837 TGTTTCGTCCACCAAAAATTTCTTCTCTTTGGTGAATTCTGCATTCAATGGGAAGAGAAA 896
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 837 TGTTTCCTCCACCAAAAATTTCTTCTCTTTGGTGAATTCTGCATTCAATGGGAAGAGGAA 896
Query 897 AATGTTGAGAAAGTCCCTCCAACACATTTCATCATCTCCTGAGATCGAAAAAGCTCTCGG 956
||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||
Sbjct 897 AATGTTGAGAAAGTCCCTCCAGCACATATCATCATCTCCTGATATCGAAAAAGCACTAGG 956
Query 957 AGTTGCTGGTCTTCCAGTCACTTCAAGGCCTGAAGAGCTTACCTTGGATGACTTTGTGAA 1016
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 957 AGTTGCTGGTCTTCCAGCCACTTCAAGGCCTGAAGAGCTTACCTTGGATGACTTTGTCAA 1016
Query 1017 GTTGCATAACGTAATCGCCAGCGAATAAGACCAACGAGAAGGACAACCATCAGTATCCAT 1076
||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 1017 GTTGCATAACGTAATCGCCAGAGAATAAGACCAACGAGAAGGAC--C-ATCAGTATCCAT 1073
Query 1077 GTTTTGTCGGCTTTGGAATTATACGAAGCCATTTGAAAACAGGAAAA-TGACGGCAACAA 1135
|||||||||||||| || ||||||||||||| ||||||||| || | ||||||||||||
Sbjct 1074 GTTTTGTCGGCTTTAGAGTTATACGAAGCCACCTGAAAACAG-AACAGTGACGGCAACAA 1132
Query 1136 G-CTGAGGAAG 1145
| | |||||||
Sbjct 1133 GAC-GAGGAAG 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64407299235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5