BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470094
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01820.1 | Symbols: PEX11C | peroxin 11c | chr1:296001-29812... 1328 0.0
> AT1G01820.1 | Symbols: PEX11C | peroxin 11c | chr1:296001-298120
REVERSE LENGTH=1048
Length=1048
Score = 1328 bits (719), Expect = 0.0
Identities = 871/938 (93%), Gaps = 36/938 (4%)
Strand=Plus/Plus
Query 45 ACTCTGTTT-TGCTTCTCCATA-CTCGTACGAGAATATTCGTAAAGGGTTT-TTCGTGAG 101
||||||||| | ||||||| | |||||||||||||||||||||| ||||| || |||||
Sbjct 65 ACTCTGTTTAT-CTTCTCC-GAGCTCGTACGAGAATATTCGTAAA-GGTTTCTT-GTGAG 120
Query 102 CTT-AACAATGAGTACCCTTGAGACCACGAGAGCTGAGCTTGGTCTGGTAG-TGTTGTAT 159
||| ||| |||||||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 121 CTTAAACGATGAGTACCCTTGAGACCACAAGAGCTGAGCTTGGTCTGGTAGTTG-TGTAT 179
Query 160 TTGAATAAAGCGGAGGCGAGGGACAAGATTTGCCGAGCTATTCAATATGGTTCCAAGTTC 219
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 180 TTGAATAAAGCGGAGGCGAGAGACAAGATTTGTCGAGCTATTCAATATGGTTCCAAGTTC 239
Query 220 TTGAGTGATGGACAACCTGGCACTGCTCAAAATGTCGACAAGTCCACCAGCTTGGCTAGA 279
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 TTGAGTGATGGCCAACCTGGCACTGCTCAAAATGTCGACAAGAACACCAGCTTGGCTAGG 299
Query 280 AAAGTTTTCCGTCTCTTCAAGTTTGTGAATGATCTTCATGCTCTCATTAGCCCTGTTCCC 339
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 AAAGTTTTCCGTCTCTTCAAGTTTGTAAATGATCTTCATGCTCTCATTAGCCCTGTTCCC 359
Query 340 AAAGGGACTCCACTCCCGCTTGTTCTCCTCGGAAAGTCTAAAAACGCGTTGCTGTCAACG 399
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 AAAGGGACTCCACTCCCGCTTGTTCTGCTCGGAAAGTCTAAAAACGCGTTGCTGTCAACG 419
Query 400 TTCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAGGACAAAGAA 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAGGACAAAGAA 479
Query 460 CGTGCTGAGCTTCTTGGACGTATATCCCTTTTCTGTTGGATGGGTTCTTCCGTCTGCACA 519
||||||||| |||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 480 CGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACA 539
Query 520 TCCTTGGTTGAGGTTGGAGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAA 579
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCTTGGTTGAGGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAA 599
Query 580 GAGATAGGGAACAAGGATAAACACCAGAATGAGCAATACCGTGCAAAACTAGAGAAATCA 639
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 GAGATAGGGAACAAGGATAAACACCAGAATGAGCAATACCGTGCAAAAGTAGAGAAATCA 659
Query 640 AACGAGAGGTCATTGGCTCTGATCAAAGCAGGGATGGATGTAGTTGTTGCTTTCGGATTG 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AACGAGAGGTCATTGGCTCTGATCAAAGCAGGGATGGATGTAGTTGTTGCTTTCGGATTG 719
Query 700 CTTCAATTGGCTCCAAAGAAAGTCACACCCCGAGTCACAGGCGCTTTCGGATTCGCCTCC 759
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 720 CTTCAATTGGCTCCAAAGAAAGTCACTCCCCGAGTCACAGGTGCTTTCGGATTCGCCTCA 779
Query 760 TCACTTATCTCTTGTTATCAGTTATTGCCGTCACATCCCAAGTCCAAGACGGTCTGAGAA 819
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 780 TCACTTATCTCTTGTTATCAGCTATTGCCGTCACATCCCAAGTCCAAGATGGTCTGATAA 839
Query 820 AAGGGAAAGAAGGAAAGACAAACTAGTTTCATTGTCCAGATGTTCCATATAT--T----- 872
|||||||| |||||||| | |||||||||||||||||| ||||||||||||| |
Sbjct 840 AAGGGAAACAAGGAAAGGCGAACTAGTTTCATTGTCCACATGTTCCATATATAGTTTGTG 899
Query 873 --------ACT-T-----GGTGTTAAATTTGTCTTGCTTGA-TACTTTTTATGGTTTGTG 917
||| | ||||||||||||||||||||||| |||||| ||| ||||||
Sbjct 900 TCTGTTTTACTATTACTTGGTGTTAAATTTGTCTTGCTTGACTACTTTA-ATG-TTTGTG 957
Query 918 TTAGATTTTATAGTATAG--GATAATGATAAACATTGC 953
||||||| ||| ||||| ||||||||||||||||||
Sbjct 958 TTAGATTCTATGGTATATAAGATAATGATAAACATTGC 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46617288416
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5