BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg470095

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G01810.1 | Symbols:  | unknown protein; Has 12 Blast hits to...   424    6e-118


> AT1G01810.1 | Symbols:  | unknown protein; Has 12 Blast hits 
to 12 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 5; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:295221-295859 FORWARD LENGTH=639
Length=639

 Score =  424 bits (229),  Expect = 6e-118
 Identities = 448/541 (83%), Gaps = 66/541 (12%)
 Strand=Plus/Plus

Query  1    ATGAAGCCGGAAAATACTAAGAGAAACACCG-CAC--CAAGACGGCGGACCAATGACGAT  57
            ||||||||||  || |||||||||| ||||| |||  ||||||||||||||||||||   
Sbjct  22   ATGAAGCCGG--AA-ACTAAGAGAAGCACCGCCACAACAAGACGGCGGACCAATGAC---  75

Query  58   GGTTGTTCTCCGTTCAATCTCAGGTCTCTCAAGCAAGCGATCGAGGCCATAGATGCTGCC  117
            ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| 
Sbjct  76   GGTGGTTCTCCGTTCAATTTCAGCTCTCTCAAGCAAGCGATCGAGGCCATAGATGCTGCA  135

Query  118  AAGGATAATTCAATCAATCTATCGTCGTTGTCTGTGGCGTTATCGGCCGCGAGTCGTGAG  177
            ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  136  AAGGATACTTCAATCAATCTATCGTCGTTGTCTGTGGCGTTATCCGCCGCGAGTCGTGAG  195

Query  178  ATGAAGCAAA-G--GGAGAAATCTCAGCGTAGGCGAGAAA-C-----GA-GG--AAG-AG  224
            |||||||||| |  |||||||||||| ||||||||||||| |     || ||  ||| ||
Sbjct  196  ATGAAGCAAAGGAAGGAGAAATCTCACCGTAGGCGAGAAACCAGGAAGAGGGACAAGAAG  255

Query  225  --G-AG--GAAGAA-GA-A-T-------A-A-GAAGCTAGTGATCGGAACAAAGCCGGAA  267
              | ||  |||||| || | |       | | ||||||||||||||||||||||||||||
Sbjct  256  AAGAAGAAGAAGAAGGATAGTAACAACAATACGAAGCTAGTGATCGGAACAAAGCCGGAA  315

Query  268  ACGGACGCAGAATTGCGACGATGGTTTTCAAACTTCGACAAATCGTTCAAACTATCATTG  327
            ||||| |||||||||||| ||||||||||| ||||||||||||| || ||||||||||||
Sbjct  316  ACGGATGCAGAATTGCGAAGATGGTTTTCATACTTCGACAAATCCTTTAAACTATCATTG  375

Query  328  CCGA------T----C-A-----G---A-AA-GCTCAACAATCATCATAAAACCTCCAAG  366
            ||||      |    | |     |   | || ||||||| ||||| |||||| ||  |||
Sbjct  376  CCGAGAAAGGTGAAACTAACATCGCCGAGAAAGCTCAACGATCATAATAAAAACTTGAAG  435

Query  367  GAAGCGCAGATTTGTGAATTGAATACAGATTTCTCGATGAATCACTGCTCTGAATCCTTT  426
            ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  436  GAAGCGCCGATTTGTGAGTTGAATACAGATTTCTCGATGAATCACTGCTCTGAATCCTTT  495

Query  427  AGACATTAGGCACAATGCTTAATTCTTCAtttttt-cttttt--tATTCAATGAAA-TGT  482
            ||| | |||| |||| |||||   ||||||||||| ||||||  || || |||||| |||
Sbjct  496  AGATACTAGGAACAACGCTTAG--CTTCATTTTTTTCTTTTTCCTACTCTATGAAAATGT  553

Query  483  T  483
            |
Sbjct  554  T  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5