BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470098 Length=2298 Score E Sequences producing significant alignments: (Bits) Value AT1G01770.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 3483 0.0 AT1G01780.1 | Symbols: PLIM2b | GATA type zinc finger transcrip... 52.8 1e-05 > AT1G01770.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | chr1:278615-282891 FORWARD LENGTH=2362 Length=2362 Score = 3483 bits (1886), Expect = 0.0 Identities = 2155/2279 (95%), Gaps = 41/2279 (2%) Strand=Plus/Plus Query 39 TCAGAAAGCAATCCGTGATCCATTGCATGATCGTGATT--T-TGGGATTTC-TACTCTCA 94 ||| |||||| ||||||||||||||||||||| | || | ||||| ||| |||||||| Sbjct 89 TCA-AAAGCAGTCCGTGATCCATTGCATGATCCT-CTTCCTGTGGGA-TTCTTACTCTCA 145 Query 95 TGGCGAACCCAGACGTTAAAGAGATTCTCTGCGATTGTGTTATAAACTTGAGAGAGAATC 154 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 146 TGGCTAACCCAGACGTTAAAGAGATTCTCTGCGATTGTGTGATAAACTTGAGAGAGAATC 205 Query 155 CGAAGAGGCGAAGGGAGACGGTTTACGTCGGATGTGGTGCTGGATTCGGCGGCGATAGGC 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 206 CGAAGAGGCGAAGGGAGACGGTTTACGTCGGATGTGGTGCTGGATTCGGCGGCGATAGGC 265 Query 215 CACTGGCCGCTCTCAAACTGCTTCAGAGTGTCGAAGACCTTAATTATCTTGTCCTTGAGT 274 ||||||| |||||||||||||||||||| || ||||| ||||| |||||||||||||||| Sbjct 266 CACTGGCGGCTCTCAAACTGCTTCAGAGAGTTGAAGAGCTTAACTATCTTGTCCTTGAGT 325 Query 275 GCTTAGCCGAACGCACTTTGGCTGATCGCTGGCTTTCTATGGCATCTGGCGGTGTCGGCT 334 ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 326 GCTTAGCCGAACGAACTTTGGCTGATCGATGGCTTTCTATGGCATCTGGCGGTCTCGGCT 385 Query 335 ACGATCCTCGTGTTTCAGAGTGGATGCATTTGTTACTACCTGTGGCTGTGGACAAAGGCA 394 |||| ||||||||||||||||||||||| ||||| |||||| |||||||||| | ||||| Sbjct 386 ACGACCCTCGTGTTTCAGAGTGGATGCAGTTGTTGCTACCTTTGGCTGTGGAGAGAGGCA 445 Query 395 CTTGTATAATCACTAACATGGGTGCAATTGATCCCTCTGGGGCTCAGAAGAAAGTTCTCG 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 CTTGTATAATCACTAACATGGGTGCAATTGATCCCTCTGGGGCTCAGAAGAAAGTTCTCG 505 Query 455 AGGTAGCCAGTAAATTAGGTCTCACAATTTCCGTGGCTGTGGCTCATGAGGTGCACTTTG 514 |||||||| || ||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 506 AGGTAGCCGGTGAATTAGGTCTCACCATTTCCGTGGCTGTGGCTCATGAGGTGCATTTTG 565 Query 515 AAACAGGCTCGGGATCATCTTTTGGCGGTCAATATTGCTCCGCAGGGGGTACTAGCACTT 574 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 566 AAACAGGCTCGGGATCATCTTTTGGCGGTCAATATTGCTCTGCAGGGGGTACTAGCACTT 625 Query 575 ATCTTGGTGCAGCTCCTATTGTTGAGTGCCTGGAGAAGTACCAACCAGACGTGATAATTA 634 ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 626 ATCTTGGAGCAGCTCCTATTGTTGAATGCCTGGAGAAGTACCAACCAAACGTGATAATTA 685 Query 635 CTTCAAGAGTGGCTGATGCCGCCTTATTTTTAGCACCAATGGTCTATGAACTAGGTTGGA 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 686 CTTCAAGAGTGGCTGATGCCGCCTTATTTTTAGCACCAATGGTCTATGAACTAGGTTGGA 745 Query 695 ATTGGAATGACTTGGAGCTGCTAGCTCAGGGAACTCTTGCTGGCCACCTTCTAGAGTGCG 754 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 746 ATTGGAATGACTTGGAGCTGCTAGCTCAGGGAACTCTCGCTGGCCACCTTCTGGAGTGCG 805 Query 755 GTTGTCAGCTCACTGGTGGATACTTCATGCATCCAGGTGACCAGTATAGAGACATGGCTT 814 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 806 GTTGCCAGCTCACTGGTGGATACTTCATGCATCCAGGTGATCAGTATAGAGACATGGCTT 865 Query 815 TCCCTCTTCTCCAGGGTTTGTCACTTCCTTATGCAGAAATTGGCTATGACGGTAAAGTAT 874 ||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 866 TCCCTCTTCTCCAGGATTTGTCACTTCCTTATGCAGAGATTGGCTATGATGGTAAAGTAT 925 Query 875 GTGTATCAAAGGCTGAAGGTAGTGGTGGAATTTTAAATACCAGTACTTGCGCCGAGCAAC 934 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 926 GTGTATCAAAGGTTGAAGGTAGTGGTGGAATTTTAAATACCAGTACTTGCGCCGAGCAAC 985 Query 935 TTCTGTATGAAATTGCTGATCCTAGTGCCTACATTACACCTGATGTGGTAATTGATATTC 994 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 986 TTCTGTATGAAATTGCTGACCCTAGTGCCTACATTACACCTGATGTGGTAATCGATATTC 1045 Query 995 GAGGCGTTTCTTTCCTTCCCCTGTCAGACTGCAAAGTACAATGCAGTGGAGCAAAACCAT 1054 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 GAGGTGTTTCTTTCCTTCCCCTGTCAGACTGCAAAGTACAATGCAGTGGAGCAAAACCAT 1105 Query 1055 CTGCTAACACTTCCGTGCCTGAGAAACTCTTGCGGTTAATTCCAAAGGAATGTGGTTGGA 1114 || |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1106 CTTCTAACACTTCTGTGCCTGAGAAACTCTTGCGGTTAATTCCAAAGGAGTGTGGTTGGA 1165 Query 1115 AAGGTTGGGGAGAGATATCTTATGGAGGACATGGTTCTATTCAACGTGCTAAAGCTTCAG 1174 |||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 1166 AAGGGTGGGGAGAGATATCTTATGGAGGAAATGGTTCTATACAACGTGCTAAAGCTTCAG 1225 Query 1175 AGTTTCTGGTTCGATCTTGGATGGAAGAAACCATTCCTGGTGTTAACCACTGTATTCTTT 1234 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1226 AGTTTCTGGTTCGATCTTGGATGGAAGAAACCATTCCTGGTGTTAACCATTGTATTCTTT 1285 Query 1235 CTTATGTGGTTGGGCTTGATAGCTTGAAGGCAACAAGCAACGGCACTGAATCTTGGCAGT 1294 |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1286 CTTATGTGATTGGGGTTGATAGCTTGAAGGCGACAAGCAACGGCACTGAATCTTGGCAGT 1345 Query 1295 CATGTGGAGATATTAGATTACGTATGGATGGTCTTTTCAAACTGAAGGAACATGCGGTCC 1354 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1346 CATGTGGAGATATTAGATTACGTATGGATGGTCTTTTTAAACTGAAGGAACATGCGGTCC 1405 Query 1355 AGTTAACGAAAGAGTTTACTGCTCTATACACAAATGGGCCAGCTGGTGGTGGTGGAATTA 1414 ||||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct 1406 AGTTAACAAAAGAGTTTACTGCTCTATATACAAACGGACCAGCTGGTGGTGGTGGAATTA 1465 Query 1415 GTACCGGACACAAGATGGAAATTTTTCTTGAAAAGCTTTTGGTTAGCCGTGAATCTGTAA 1474 ||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| Sbjct 1466 GTACCGGACACAAGATGGAAATTGTTCTTGAAAAGCGTTTGGTCAGCCGTGAATCTGTAA 1525 Query 1475 TGTGGAAAACTGGACTTCAGCACACCAACACTTCAGAGTCAGAGACCCCTGAACATCATT 1534 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1526 TGTGGAAAACTGGACTTCAGCACACCAACACTTCAGAGCCAGAGACCTCTGAACATCATT 1585 Query 1535 CTCCAGTTGCTCGAGAGAAAAT-CGGAAAGATCCCTAAGGAAAGTC-AAGATAACCTTAC 1592 |||||| ||| ||| | | |||| | |||||||||| || || | |||||||| Sbjct 1586 CTCCAG-------AGA-AAA-TGCC-AAAGTTACCTAAGGAAAATCCAA-AGAACCTTAC 1634 Query 1593 AATGAGAGGCTATCAATCTGGATTTCATCACTCTCCTGCTCCATCTGGCCAAAAGATCCC 1652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1635 AATGAGAGGCTATCAATCTGGATTTCATCACTCTCCTGCTCCATCTGGCCAAAAGATCCC 1694 Query 1653 ACTCTACTCTGTTGCTCATAGCCGGGCTGGTGATAAAGGAAACGACATAAACTTCTCAAT 1712 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1695 ACTCTACTCTGTTGCACATAGCCGGGCTGGCGATAAAGGAAACGACATAAACTTCTCAAT 1754 Query 1713 AATCCCACATTATTCCCCAGATATTGAGCGTCTGAAACTCATAATCACTCCTCAATGGGT 1772 |||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||| Sbjct 1755 AATCCCGCATTATTCCCCAGATGTCGAGCGTCTGAAACTCATAATTACTCCTCAATGGGT 1814 Query 1773 AAAGCATGTGATGTCAGTTCTGTTATCAACCTCTTCGTTTCTGGAAATTG-ATGCAAAAC 1831 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1815 AAAGCATGTGATGTCAGTTCTGTTATCAACCTCTTCGTTTCTGGAA-TTGGATGCAAAAC 1873 Query 1832 CAGTCGATGAAAATGTGTCAGTAGAGATATATGATGTTGAAGGCATTCATGCTATGAATG 1891 || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1874 CAATGGATGAAAATGTGTCAGTAGAGATATATGACGTTGAAGGCATTCATGCTATGAATG 1933 Query 1892 TTGTCGTAAGGAATATATTAGATGGTGGAGTCAACTGTTCCAGGAGGATCGATCGACACG 1951 |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1934 TTGTCGTACGGAACATATTAGATGGTGGAGTCAACTGTTCCAGGAGGATCGACCGACACG 1993 Query 1952 GAAAGACAATCTCAGATCTCATCCTGTGTCAACAAGTTGTGTTGTAAGATCTGACTGACA 2011 ||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| Sbjct 1994 GAAAGACAATCTCAGATCTCATCTTGTGTCAACAAGTTGTGTTG-A---TCTGACTGACA 2049 Query 2012 TGGGTTGCACCACCTCAGAGACAGTTGGCTTAAAGTAACAATCCCTTATTGGGTTGAAAT 2071 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2050 TGGGTTGCACCACCTCAGAGACAGTTGGCTTAAAGTAACAATCCCTTATTGGATTGAAAT 2109 Query 2072 TGTCAGAAACCACAACCCTTCTTTTGCTCAACTCCAATCAATTTGCCACCCAATTTTATC 2131 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2110 TGTCAGAAACCACAACCCTTCTTTTGCTCAACTCCAATCACTTTGCCACCCAATTTTATC 2169 Query 2132 TCATTGATTTTGCaaaaaagatcaaagagagagagagagagagagagaaaaaaaaaaaaa 2191 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2170 TCATTCATTTTGCAAAAAAGATCAAAGAGAGAGAGAGAGAGAGAGAGAAAGAAAAAAAG- 2228 Query 2192 gaaagaaaaaCTTCCTCCGTTACAACCTCACAA---C-------T--CATATAAAAGAGG 2239 |||| ||| ||||||||||||||||||||||| | | ||||||||||||| Sbjct 2229 GAAA-AAAC-CTTCCTCCGTTACAACCTCACAATTGCAACAAAGTTTCATATAAAAGAGG 2286 Query 2240 ACAGAAATTTCGCAGGTTCCTCCTTTGTCTGAGGATCTTGGAGAAGGAAGGAAACAACA 2298 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2287 ACAGAAATTTCGCAGGTTCCTCCGTTGTCTGAGGATCTTGGAGAAGGAAGGAAACAACA 2345 > AT1G01780.1 | Symbols: PLIM2b | GATA type zinc finger transcription factor family protein | chr1:282761-284245 FORWARD LENGTH=939 Length=939 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 2271 AGGATCTTGGAGAAGGAAGGAAACAACA 2298 |||||||||||||||||||||||||||| Sbjct 87 AGGATCTTGGAGAAGGAAGGAAACAACA 114 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114055638240 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5