BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470098
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01770.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 3483 0.0
AT1G01780.1 | Symbols: PLIM2b | GATA type zinc finger transcrip... 52.8 1e-05
> AT1G01770.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839);
Has 1597 Blast hits to 1509 proteins in 306 species:
Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants
- 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
| chr1:278615-282891 FORWARD LENGTH=2362
Length=2362
Score = 3483 bits (1886), Expect = 0.0
Identities = 2155/2279 (95%), Gaps = 41/2279 (2%)
Strand=Plus/Plus
Query 39 TCAGAAAGCAATCCGTGATCCATTGCATGATCGTGATT--T-TGGGATTTC-TACTCTCA 94
||| |||||| ||||||||||||||||||||| | || | ||||| ||| ||||||||
Sbjct 89 TCA-AAAGCAGTCCGTGATCCATTGCATGATCCT-CTTCCTGTGGGA-TTCTTACTCTCA 145
Query 95 TGGCGAACCCAGACGTTAAAGAGATTCTCTGCGATTGTGTTATAAACTTGAGAGAGAATC 154
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 146 TGGCTAACCCAGACGTTAAAGAGATTCTCTGCGATTGTGTGATAAACTTGAGAGAGAATC 205
Query 155 CGAAGAGGCGAAGGGAGACGGTTTACGTCGGATGTGGTGCTGGATTCGGCGGCGATAGGC 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CGAAGAGGCGAAGGGAGACGGTTTACGTCGGATGTGGTGCTGGATTCGGCGGCGATAGGC 265
Query 215 CACTGGCCGCTCTCAAACTGCTTCAGAGTGTCGAAGACCTTAATTATCTTGTCCTTGAGT 274
||||||| |||||||||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 266 CACTGGCGGCTCTCAAACTGCTTCAGAGAGTTGAAGAGCTTAACTATCTTGTCCTTGAGT 325
Query 275 GCTTAGCCGAACGCACTTTGGCTGATCGCTGGCTTTCTATGGCATCTGGCGGTGTCGGCT 334
||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 326 GCTTAGCCGAACGAACTTTGGCTGATCGATGGCTTTCTATGGCATCTGGCGGTCTCGGCT 385
Query 335 ACGATCCTCGTGTTTCAGAGTGGATGCATTTGTTACTACCTGTGGCTGTGGACAAAGGCA 394
|||| ||||||||||||||||||||||| ||||| |||||| |||||||||| | |||||
Sbjct 386 ACGACCCTCGTGTTTCAGAGTGGATGCAGTTGTTGCTACCTTTGGCTGTGGAGAGAGGCA 445
Query 395 CTTGTATAATCACTAACATGGGTGCAATTGATCCCTCTGGGGCTCAGAAGAAAGTTCTCG 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 CTTGTATAATCACTAACATGGGTGCAATTGATCCCTCTGGGGCTCAGAAGAAAGTTCTCG 505
Query 455 AGGTAGCCAGTAAATTAGGTCTCACAATTTCCGTGGCTGTGGCTCATGAGGTGCACTTTG 514
|||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 506 AGGTAGCCGGTGAATTAGGTCTCACCATTTCCGTGGCTGTGGCTCATGAGGTGCATTTTG 565
Query 515 AAACAGGCTCGGGATCATCTTTTGGCGGTCAATATTGCTCCGCAGGGGGTACTAGCACTT 574
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 566 AAACAGGCTCGGGATCATCTTTTGGCGGTCAATATTGCTCTGCAGGGGGTACTAGCACTT 625
Query 575 ATCTTGGTGCAGCTCCTATTGTTGAGTGCCTGGAGAAGTACCAACCAGACGTGATAATTA 634
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 626 ATCTTGGAGCAGCTCCTATTGTTGAATGCCTGGAGAAGTACCAACCAAACGTGATAATTA 685
Query 635 CTTCAAGAGTGGCTGATGCCGCCTTATTTTTAGCACCAATGGTCTATGAACTAGGTTGGA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 CTTCAAGAGTGGCTGATGCCGCCTTATTTTTAGCACCAATGGTCTATGAACTAGGTTGGA 745
Query 695 ATTGGAATGACTTGGAGCTGCTAGCTCAGGGAACTCTTGCTGGCCACCTTCTAGAGTGCG 754
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 746 ATTGGAATGACTTGGAGCTGCTAGCTCAGGGAACTCTCGCTGGCCACCTTCTGGAGTGCG 805
Query 755 GTTGTCAGCTCACTGGTGGATACTTCATGCATCCAGGTGACCAGTATAGAGACATGGCTT 814
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 806 GTTGCCAGCTCACTGGTGGATACTTCATGCATCCAGGTGATCAGTATAGAGACATGGCTT 865
Query 815 TCCCTCTTCTCCAGGGTTTGTCACTTCCTTATGCAGAAATTGGCTATGACGGTAAAGTAT 874
||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 866 TCCCTCTTCTCCAGGATTTGTCACTTCCTTATGCAGAGATTGGCTATGATGGTAAAGTAT 925
Query 875 GTGTATCAAAGGCTGAAGGTAGTGGTGGAATTTTAAATACCAGTACTTGCGCCGAGCAAC 934
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 GTGTATCAAAGGTTGAAGGTAGTGGTGGAATTTTAAATACCAGTACTTGCGCCGAGCAAC 985
Query 935 TTCTGTATGAAATTGCTGATCCTAGTGCCTACATTACACCTGATGTGGTAATTGATATTC 994
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 986 TTCTGTATGAAATTGCTGACCCTAGTGCCTACATTACACCTGATGTGGTAATCGATATTC 1045
Query 995 GAGGCGTTTCTTTCCTTCCCCTGTCAGACTGCAAAGTACAATGCAGTGGAGCAAAACCAT 1054
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 GAGGTGTTTCTTTCCTTCCCCTGTCAGACTGCAAAGTACAATGCAGTGGAGCAAAACCAT 1105
Query 1055 CTGCTAACACTTCCGTGCCTGAGAAACTCTTGCGGTTAATTCCAAAGGAATGTGGTTGGA 1114
|| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1106 CTTCTAACACTTCTGTGCCTGAGAAACTCTTGCGGTTAATTCCAAAGGAGTGTGGTTGGA 1165
Query 1115 AAGGTTGGGGAGAGATATCTTATGGAGGACATGGTTCTATTCAACGTGCTAAAGCTTCAG 1174
|||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1166 AAGGGTGGGGAGAGATATCTTATGGAGGAAATGGTTCTATACAACGTGCTAAAGCTTCAG 1225
Query 1175 AGTTTCTGGTTCGATCTTGGATGGAAGAAACCATTCCTGGTGTTAACCACTGTATTCTTT 1234
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1226 AGTTTCTGGTTCGATCTTGGATGGAAGAAACCATTCCTGGTGTTAACCATTGTATTCTTT 1285
Query 1235 CTTATGTGGTTGGGCTTGATAGCTTGAAGGCAACAAGCAACGGCACTGAATCTTGGCAGT 1294
|||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1286 CTTATGTGATTGGGGTTGATAGCTTGAAGGCGACAAGCAACGGCACTGAATCTTGGCAGT 1345
Query 1295 CATGTGGAGATATTAGATTACGTATGGATGGTCTTTTCAAACTGAAGGAACATGCGGTCC 1354
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1346 CATGTGGAGATATTAGATTACGTATGGATGGTCTTTTTAAACTGAAGGAACATGCGGTCC 1405
Query 1355 AGTTAACGAAAGAGTTTACTGCTCTATACACAAATGGGCCAGCTGGTGGTGGTGGAATTA 1414
||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1406 AGTTAACAAAAGAGTTTACTGCTCTATATACAAACGGACCAGCTGGTGGTGGTGGAATTA 1465
Query 1415 GTACCGGACACAAGATGGAAATTTTTCTTGAAAAGCTTTTGGTTAGCCGTGAATCTGTAA 1474
||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||
Sbjct 1466 GTACCGGACACAAGATGGAAATTGTTCTTGAAAAGCGTTTGGTCAGCCGTGAATCTGTAA 1525
Query 1475 TGTGGAAAACTGGACTTCAGCACACCAACACTTCAGAGTCAGAGACCCCTGAACATCATT 1534
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1526 TGTGGAAAACTGGACTTCAGCACACCAACACTTCAGAGCCAGAGACCTCTGAACATCATT 1585
Query 1535 CTCCAGTTGCTCGAGAGAAAAT-CGGAAAGATCCCTAAGGAAAGTC-AAGATAACCTTAC 1592
|||||| ||| ||| | | |||| | |||||||||| || || | ||||||||
Sbjct 1586 CTCCAG-------AGA-AAA-TGCC-AAAGTTACCTAAGGAAAATCCAA-AGAACCTTAC 1634
Query 1593 AATGAGAGGCTATCAATCTGGATTTCATCACTCTCCTGCTCCATCTGGCCAAAAGATCCC 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 AATGAGAGGCTATCAATCTGGATTTCATCACTCTCCTGCTCCATCTGGCCAAAAGATCCC 1694
Query 1653 ACTCTACTCTGTTGCTCATAGCCGGGCTGGTGATAAAGGAAACGACATAAACTTCTCAAT 1712
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1695 ACTCTACTCTGTTGCACATAGCCGGGCTGGCGATAAAGGAAACGACATAAACTTCTCAAT 1754
Query 1713 AATCCCACATTATTCCCCAGATATTGAGCGTCTGAAACTCATAATCACTCCTCAATGGGT 1772
|||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 1755 AATCCCGCATTATTCCCCAGATGTCGAGCGTCTGAAACTCATAATTACTCCTCAATGGGT 1814
Query 1773 AAAGCATGTGATGTCAGTTCTGTTATCAACCTCTTCGTTTCTGGAAATTG-ATGCAAAAC 1831
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1815 AAAGCATGTGATGTCAGTTCTGTTATCAACCTCTTCGTTTCTGGAA-TTGGATGCAAAAC 1873
Query 1832 CAGTCGATGAAAATGTGTCAGTAGAGATATATGATGTTGAAGGCATTCATGCTATGAATG 1891
|| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1874 CAATGGATGAAAATGTGTCAGTAGAGATATATGACGTTGAAGGCATTCATGCTATGAATG 1933
Query 1892 TTGTCGTAAGGAATATATTAGATGGTGGAGTCAACTGTTCCAGGAGGATCGATCGACACG 1951
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1934 TTGTCGTACGGAACATATTAGATGGTGGAGTCAACTGTTCCAGGAGGATCGACCGACACG 1993
Query 1952 GAAAGACAATCTCAGATCTCATCCTGTGTCAACAAGTTGTGTTGTAAGATCTGACTGACA 2011
||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||
Sbjct 1994 GAAAGACAATCTCAGATCTCATCTTGTGTCAACAAGTTGTGTTG-A---TCTGACTGACA 2049
Query 2012 TGGGTTGCACCACCTCAGAGACAGTTGGCTTAAAGTAACAATCCCTTATTGGGTTGAAAT 2071
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2050 TGGGTTGCACCACCTCAGAGACAGTTGGCTTAAAGTAACAATCCCTTATTGGATTGAAAT 2109
Query 2072 TGTCAGAAACCACAACCCTTCTTTTGCTCAACTCCAATCAATTTGCCACCCAATTTTATC 2131
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2110 TGTCAGAAACCACAACCCTTCTTTTGCTCAACTCCAATCACTTTGCCACCCAATTTTATC 2169
Query 2132 TCATTGATTTTGCaaaaaagatcaaagagagagagagagagagagagaaaaaaaaaaaaa 2191
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2170 TCATTCATTTTGCAAAAAAGATCAAAGAGAGAGAGAGAGAGAGAGAGAAAGAAAAAAAG- 2228
Query 2192 gaaagaaaaaCTTCCTCCGTTACAACCTCACAA---C-------T--CATATAAAAGAGG 2239
|||| ||| ||||||||||||||||||||||| | | |||||||||||||
Sbjct 2229 GAAA-AAAC-CTTCCTCCGTTACAACCTCACAATTGCAACAAAGTTTCATATAAAAGAGG 2286
Query 2240 ACAGAAATTTCGCAGGTTCCTCCTTTGTCTGAGGATCTTGGAGAAGGAAGGAAACAACA 2298
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2287 ACAGAAATTTCGCAGGTTCCTCCGTTGTCTGAGGATCTTGGAGAAGGAAGGAAACAACA 2345
> AT1G01780.1 | Symbols: PLIM2b | GATA type zinc finger transcription
factor family protein | chr1:282761-284245 FORWARD LENGTH=939
Length=939
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 2271 AGGATCTTGGAGAAGGAAGGAAACAACA 2298
||||||||||||||||||||||||||||
Sbjct 87 AGGATCTTGGAGAAGGAAGGAAACAACA 114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114055638240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5