BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470101
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01730.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1000 0.0
> AT1G01730.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to
42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa
- 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:270956-272061 FORWARD LENGTH=910
Length=910
Score = 1000 bits (541), Expect = 0.0
Identities = 688/752 (91%), Gaps = 38/752 (5%)
Strand=Plus/Plus
Query 1 TATGGAGATCTCTTTCGGCGGTTGAAAAACCTTTGAAAAATTGAAAATGGAGAAATCGAC 60
||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 3 TATGGCGATCTCTTTCGGCGGTTG-AAAACCTTTG-AAAATTGAAAATGGAGAAATCGAC 60
Query 61 CTCGCCGGCGACTCAAGTCACCGAA---CCTCCT-C--CTACTTCATCTCTTCCAGCACA 114
||| |||||||||| |||||||||| |||||| | ||||||||||||||||||||||
Sbjct 61 CTCTCCGGCGACTCGAGTCACCGAACCTCCTCCTGCTGCTACTTCATCTCTTCCAGCACA 120
Query 115 AGCTCCTCCGCTTCCTACATCTGCAGATCAGAGATCAGCTGAGTTACCTT---C-GC-C- 168
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 121 AGCTCCTCCGCTTCCTACATCTGCAGATCAGAGATCAGCTGAGTTACCTTCGCCTGCTCA 180
Query 169 G---GCTCAGATGACTGCGCCTCCGTCGACAGTTACCACAGATCCGTGGTCCAGGGGAAG 225
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCCAGCTCAGATGACTGCGCCTCCGTCGACAGTTACCACAGATCCGTCGTCCAGGGGAAG 240
Query 226 AAAGCGAGCGCTGGAAGCGAATCTTCAGATCGAGAGCTCCAACTACTACAAGATGCGTCT 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGCGAGCGCTGGAAGCGAATCTTCAGATCGAGAGCTCCAACTACTACAAGATGCGTCT 300
Query 286 CCTTGTCAAAGATCTTCGCCCTCACGTTCTCGAGGTTTTACGAACTCCAGATTTCAGCAA 345
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 301 CCTTGTCAAAGATCTTCGCCCTCACGTTCTCGAGGTTTTACGAACTCCAGACTTGAGGAA 360
Query 346 CTCTAAGGCAGCTATCGAGATTCAAGAGAAGATGAATCTTATGCTTCAACTGTACCAAGA 405
||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 361 CTCTAAGGCAGTTATCGAGATTCAAGAGAAGATGAAGCTTATGCTTCAACTGTACGAAGA 420
Query 406 GATGATCGGAGAATCTCCCAAACGTGAGAAAACAGCTAAGAGCGAGTCTTTATCCAACGG 465
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 GATGATTGGAGAGTCTCCCAAACGTGAGAAAACAGCTAAGAGCGACTCTTTATCCAACGG 480
Query 466 AAAGGC---TACTACTACTA------------GTGTATTGAGATCATCTGAAACA-AGCT 509
|||||| ||||||||||| ||||| |||||||||||||||| ||
Sbjct 481 AAAGGCGACTACTACTACTACTACTACTACTAGTGTACTGAGATCATCTGAAACTGAGA- 539
Query 510 ATGTGA-AT-TCTGATGGAGATGGCGACAAGGTGGTTGGAGGGTCTGCATTTGGCTGGAA 567
| | | | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 A-GC-ACAGCTCTGATGGAGATGGCGACAAGGTGGTTGGAGGGTCGGCATTTGGCTGGAA 597
Query 568 CTTCATAACCTCTGGAGGGCCAGGCACTGAACCTGTTTATTCTGGAATGTCAAAGGAAGA 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTTCATAACCTCTGGAGGGCCAGGCACTGAACCTGTTTATTCTGGAATGTCAAAGGAAGA 657
Query 628 ATACAGAAGCTCTCACCCAATTATCCAAGTGGAGGCAGCGGTTGAGTTGCACGACACATT 687
|||||||||||||||||||||||| ||||||||||||| | ||||||||| | |||||||
Sbjct 658 ATACAGAAGCTCTCACCCAATTATGCAAGTGGAGGCAGAGCTTGAGTTGCCCAACACATT 717
Query 688 CTAAGCTTTGTTAGTCGAGTTTGTATAATATT 719
||||||||||||||| | ||||||||||||||
Sbjct 718 CTAAGCTTTGTTAGTGGTGTTTGTATAATATT 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5